Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d016298_P001 | Maize | nucleus | 84.66 | 54.38 |
| EES04785 | Sorghum | nucleus | 76.14 | 47.52 |
| Os02t0226600-01 | Rice | nucleus | 50.85 | 33.21 |
| CDX75307 | Canola | nucleus | 17.05 | 27.03 |
| Zm00001d046223_P006 | Maize | nucleus | 35.23 | 25.25 |
| KRH52190 | Soybean | nucleus | 24.43 | 15.66 |
| PGSC0003DMT400076995 | Potato | nucleus | 23.86 | 15.56 |
| Bra011403.1-P | Field mustard | nucleus | 20.17 | 15.24 |
| CDX75313 | Canola | nucleus | 20.17 | 15.24 |
| GSMUA_AchrUn_... | Banana | nucleus | 25.57 | 15.18 |
| Solyc08g065420.2.1 | Tomato | nucleus | 23.86 | 15.03 |
| VIT_04s0008g00880.t01 | Wine grape | nucleus | 25.0 | 14.94 |
| KRH05496 | Soybean | nucleus | 24.15 | 14.89 |
| CDY13511 | Canola | nucleus | 18.47 | 14.87 |
| Bra037031.1-P | Field mustard | nucleus | 18.47 | 14.87 |
| GSMUA_Achr2P19430_001 | Banana | nucleus | 22.73 | 14.79 |
| CDX68927 | Canola | nucleus | 19.03 | 14.53 |
| KRH61499 | Soybean | nucleus | 23.58 | 14.43 |
| CDX72383 | Canola | nucleus | 17.9 | 13.94 |
| CDX68925 | Canola | cytosol | 7.1 | 13.81 |
| AT4G32980.1 | Thale cress | nucleus | 18.47 | 13.74 |
| Zm00001d033379_P001 | Maize | nucleus | 13.35 | 13.28 |
| Zm00001d035907_P001 | Maize | nucleus | 13.92 | 9.84 |
| Zm00001d010060_P001 | Maize | nucleus | 14.77 | 9.08 |
| Zm00001d038355_P001 | Maize | nucleus | 14.77 | 9.03 |
| Zm00001d053151_P003 | Maize | nucleus | 16.19 | 8.49 |
| Zm00001d031182_P002 | Maize | nucleus | 15.91 | 8.38 |
| Zm00001d033378_P003 | Maize | nucleus | 15.06 | 8.14 |
| Zm00001d013547_P002 | Maize | nucleus | 14.77 | 8.14 |
| Zm00001d027435_P001 | Maize | nucleus | 14.2 | 8.06 |
| Zm00001d042864_P002 | Maize | nucleus | 13.35 | 8.01 |
| Zm00001d029736_P001 | Maize | nucleus, plastid | 15.34 | 7.85 |
| Zm00001d033898_P002 | Maize | nucleus | 16.48 | 7.68 |
| Zm00001d027802_P002 | Maize | nucleus | 12.5 | 7.5 |
| CDX68906 | Canola | nucleus | 3.41 | 4.63 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.5 | UniProt:A0A1D6DYM0 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox_KN_domain |
| InterPro:Homeobox_dom | InterPro:IPR001356 | ProteinID:ONM13670.1 | PFAM:PF05920 | PFAM:PF07526 | InterPro:POX_dom |
| PANTHER:PTHR11850 | PANTHER:PTHR11850:SF119 | UniParc:UPI000843AB77 | EnsemblPlantsGene:Zm00001d002249 | EnsemblPlants:Zm00001d002249_P001 | EnsemblPlants:Zm00001d002249_T001 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr2:-:8960429..8961938
Molecular Weight (calculated)
37529.1 Da
IEP (calculated)
7.064
GRAVY (calculated)
-0.276
Length
352 amino acids
Sequence
(BLAST)
(BLAST)
001: MSAEVPHFHP CVLLDQGGFG FGLGNTAVVG GSGRALRGEQ HRAGLLRQPA AQLLANAPAP PRDDRAGGRT PPDEMDDELY GVAGCDSRVA ASLRCPSQSG
101: AMSVWSSSKK PYGIWTSAGG PVPVPAHETY HLAGARLSDA GGLHYPLAAC SGANASAAVV ASEPTLCSNS IASSDSTLNA TEWTSNQCLD KIQSTTAKFN
201: TLMHSPPGGG GICAPFAHRA VSAMYRGLRR WLAGEIMATA SRASCWGESS SSVTVAAGGD VEQSWESAFI QKHWSAQQLW RTEQQCWRPQ CGLPEKSVAV
301: LKAWMFENFL HPYPKDHEKD VLAARSSLTR NQAQIEIPPD SFQIRFFFGE MG
101: AMSVWSSSKK PYGIWTSAGG PVPVPAHETY HLAGARLSDA GGLHYPLAAC SGANASAAVV ASEPTLCSNS IASSDSTLNA TEWTSNQCLD KIQSTTAKFN
201: TLMHSPPGGG GICAPFAHRA VSAMYRGLRR WLAGEIMATA SRASCWGESS SSVTVAAGGD VEQSWESAFI QKHWSAQQLW RTEQQCWRPQ CGLPEKSVAV
301: LKAWMFENFL HPYPKDHEKD VLAARSSLTR NQAQIEIPPD SFQIRFFFGE MG
001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK
Arabidopsis Description
ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.