Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75307 | Canola | nucleus | 45.55 | 94.59 |
| CDX75313 | Canola | nucleus | 95.44 | 94.42 |
| CDX68906 | Canola | nucleus | 48.59 | 86.49 |
| CDY13511 | Canola | nucleus | 78.96 | 83.3 |
| CDX72383 | Canola | nucleus | 81.13 | 82.74 |
| AT4G32980.1 | Thale cress | nucleus | 78.31 | 76.32 |
| CDX68925 | Canola | cytosol | 24.51 | 62.43 |
| CDY21826 | Canola | extracellular, plastid | 7.59 | 36.46 |
| KRH52190 | Soybean | nucleus | 42.73 | 35.88 |
| VIT_04s0008g00880.t01 | Wine grape | nucleus | 45.55 | 35.65 |
| CDX83753 | Canola | nucleus | 14.53 | 35.26 |
| KRH05496 | Soybean | nucleus | 43.17 | 34.85 |
| KRH61499 | Soybean | nucleus | 42.52 | 34.09 |
| PGSC0003DMT400076995 | Potato | nucleus | 39.48 | 33.7 |
| Solyc08g065420.2.1 | Tomato | nucleus | 39.7 | 32.74 |
| CDY47523 | Canola | nucleus | 18.0 | 28.72 |
| CDX73171 | Canola | nucleus | 18.0 | 28.72 |
| GSMUA_Achr4P02680_001 | Banana | nucleus | 34.06 | 27.12 |
| CDY29411 | Canola | nucleus | 20.17 | 23.91 |
| Zm00001d046223_P006 | Maize | nucleus | 25.16 | 23.63 |
| TraesCS7A01G358300.1 | Wheat | nucleus | 27.98 | 23.33 |
| TraesCS7B01G269400.1 | Wheat | nucleus | 27.77 | 23.19 |
| TraesCS7D01G364500.1 | Wheat | nucleus | 27.55 | 23.09 |
| KXG20197 | Sorghum | nucleus | 24.73 | 23.08 |
| CDY46209 | Canola | nucleus | 18.87 | 23.02 |
| Os02t0226600-01 | Rice | nucleus | 26.68 | 22.82 |
| CDY45383 | Canola | nucleus | 12.8 | 22.43 |
| CDY02261 | Canola | nucleus | 21.69 | 22.27 |
| Zm00001d016298_P001 | Maize | nucleus | 26.46 | 22.26 |
| Os06t0562300-00 | Rice | nucleus | 26.25 | 22.2 |
| CDX89711 | Canola | nucleus | 21.69 | 21.98 |
| EES04785 | Sorghum | nucleus | 26.25 | 21.45 |
| CDY52073 | Canola | nucleus | 21.48 | 21.02 |
| CDX68129 | Canola | nucleus | 21.04 | 20.51 |
| CDY39031 | Canola | nucleus | 21.26 | 20.5 |
| HORVU7Hr1G088090.4 | Barley | nucleus | 24.51 | 20.4 |
| CDX77099 | Canola | nucleus | 19.74 | 20.27 |
| CDY30566 | Canola | nucleus | 19.52 | 20.09 |
| CDX96653 | Canola | nucleus | 21.69 | 19.76 |
| CDX73170 | Canola | nucleus | 21.69 | 19.46 |
| CDY63699 | Canola | nucleus | 17.57 | 19.38 |
| CDX85896 | Canola | nucleus | 20.82 | 19.09 |
| Zm00001d002249_P001 | Maize | nucleus | 14.53 | 19.03 |
| CDY47524 | Canola | nucleus | 21.26 | 18.99 |
| CDY39359 | Canola | nucleus | 21.04 | 18.69 |
| CDX71279 | Canola | nucleus | 15.62 | 18.56 |
| CDY32069 | Canola | nucleus | 25.38 | 18.4 |
| CDY40420 | Canola | nucleus | 25.16 | 18.35 |
| CDX84171 | Canola | nucleus | 22.34 | 17.52 |
| CDX84585 | Canola | nucleus | 24.95 | 17.14 |
| CDY44476 | Canola | nucleus | 20.82 | 16.9 |
| CDX75085 | Canola | nucleus | 22.99 | 16.88 |
| CDX76849 | Canola | nucleus | 21.69 | 16.64 |
| CDY46061 | Canola | nucleus | 21.91 | 16.61 |
| CDX79646 | Canola | nucleus | 24.73 | 16.5 |
| CDY45321 | Canola | nucleus, plastid | 23.43 | 15.77 |
| CDY39669 | Canola | nucleus | 21.91 | 15.66 |
| CDY62523 | Canola | nucleus | 21.69 | 15.43 |
| CDY24765 | Canola | nucleus | 21.91 | 15.14 |
| CDY22463 | Canola | nucleus | 21.91 | 15.07 |
| CDX69252 | Canola | nucleus | 21.26 | 14.69 |
| CDX75604 | Canola | nucleus | 21.26 | 14.65 |
| CDY69132 | Canola | nucleus | 17.79 | 14.29 |
| CDY48107 | Canola | nucleus | 17.57 | 14.09 |
| CDY10473 | Canola | nucleus | 17.35 | 13.91 |
| CDY40327 | Canola | nucleus | 17.35 | 13.84 |
| CDY55113 | Canola | nucleus | 13.23 | 11.66 |
| CDX80798 | Canola | nucleus | 13.23 | 11.47 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.5 | GO:A0A078BX88 | EnsemblPlants:CDX68927 | ProteinID:CDX68927 | ProteinID:CDX68927.1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00130670001 | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom | InterPro:IPR001356 | PFAM:PF05920 | PFAM:PF07526 | InterPro:POX_dom |
| PFscan:PS50071 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF92 | SMART:SM00389 | SMART:SM00574 | SUPFAM:SSF46689 |
| UniParc:UPI0004EF0322 | : | : | : | : | : |
Description
BnaC01g05260D
Coordinates
chrLK031789:-:2063243..2064888
Molecular Weight (calculated)
52678.4 Da
IEP (calculated)
6.794
GRAVY (calculated)
-0.520
Length
461 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNINTYSSL DNVMTNQNHL LMDLIPSRED STSFPTMLPW NSIRQDPLQM GVFDIFNSFL TNKYLSSTSR STNVHETSFE AMAPPPSLHP MDHLRPYDDP
101: SNNMWSLGEN SEFHAYPFIE GVVGPSEPII STFGEEFPRN EFSLSLATDV SDECSEISLC AATKSTRITS EQASSSSKDM SNVSQVIFCS KYLHSVQEIL
201: SHFATYSLKG LETNPQCYFS SRGTESEGTN SAFTSCYENL NEFLDGGSQR QALEAKKTHL LDLLQMVDDR YSHCVDEIHT VVSAFHAATE LDPQLHTRFA
301: LQTISFLYKN LRERISKKIL MMGSVLERGK EKSQEDSIFH QHCLLQQLKR KNHQVWRPQR GLPEKSVSVL RTWMFQNFLH PYPKDSEKHL LAIRSGLTRS
401: QVSNWFINAR VRLWKPMIED MYAEMNKRKM SNTHLQGGNG GSVIRVPKSV MMSQERGKIR E
101: SNNMWSLGEN SEFHAYPFIE GVVGPSEPII STFGEEFPRN EFSLSLATDV SDECSEISLC AATKSTRITS EQASSSSKDM SNVSQVIFCS KYLHSVQEIL
201: SHFATYSLKG LETNPQCYFS SRGTESEGTN SAFTSCYENL NEFLDGGSQR QALEAKKTHL LDLLQMVDDR YSHCVDEIHT VVSAFHAATE LDPQLHTRFA
301: LQTISFLYKN LRERISKKIL MMGSVLERGK EKSQEDSIFH QHCLLQQLKR KNHQVWRPQR GLPEKSVSVL RTWMFQNFLH PYPKDSEKHL LAIRSGLTRS
401: QVSNWFINAR VRLWKPMIED MYAEMNKRKM SNTHLQGGNG GSVIRVPKSV MMSQERGKIR E
001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK
Arabidopsis Description
ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.