Factsheet for TraesCS7A01G358300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G135600.1
TraesCS4B01G346100.1
TraesCS4D01G341000.1
TraesCS5A01G515000.1
TraesCS5B01G454600.1
TraesCS6A01G145500.1
TraesCS6B01G173900.1
TraesCS6D01G134800.1
TraesCS7A01G511800.2
TraesCS7B01G423100.2
TraesCS7D01G501000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32980.1	TraesCS4B01G346100.1	AT1G62990.1	15781858
AT4G32980.1	TraesCS4D01G341000.1	AT1G62990.1	15781858
AT4G32980.1	TraesCS5A01G515000.1	AT1G62990.1	15781858
AT4G32980.1	TraesCS1B01G135600.1	AT5G11060.1	15781858
AT4G32980.1	TraesCS5B01G454600.1	AT5G11060.1	15781858
AT4G32980.1	TraesCS6A01G145500.1	AT5G11060.1	15781858
AT4G32980.1	TraesCS6B01G173900.1	AT5G11060.1	15781858
AT4G32980.1	TraesCS6D01G134800.1	AT5G11060.1	15781858
AT4G32980.1	TraesCS7A01G511800.2	AT5G11060.1	15781858
AT4G32980.1	TraesCS7B01G423100.2	AT5G11060.1	15781858
AT4G32980.1	TraesCS7D01G501000.1	AT5G11060.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G364500.1	Wheat	nucleus	93.13	93.64
TraesCS7B01G269400.1	Wheat	nucleus	92.95	93.12
HORVU7Hr1G088090.4	Barley	nucleus	82.64	82.49
Os06t0562300-00	Rice	nucleus	55.7	56.51
Zm00001d046223_P006	Maize	nucleus	47.92	53.97
KXG20197	Sorghum	nucleus	47.74	53.44
CDX75307	Canola	nucleus	16.82	41.89
VIT_04s0008g00880.t01	Wine grape	nucleus	30.56	28.69
Bra037031.1-P	Field mustard	nucleus	22.6	28.6
CDX75313	Canola	nucleus	23.69	28.11
GSMUA_Achr2P19430_001	Banana	nucleus	27.49	28.1
CDX68927	Canola	nucleus	23.33	27.98
CDY13511	Canola	nucleus	22.06	27.92
Bra011403.1-P	Field mustard	nucleus	23.51	27.9
GSMUA_AchrUn_...	Banana	nucleus	29.29	27.32
PGSC0003DMT400076995	Potato	nucleus	26.58	27.22
AT4G32980.1	Thale cress	nucleus	23.15	27.06
KRH05496	Soybean	nucleus	27.49	26.62
KRH52190	Soybean	nucleus	26.4	26.59
CDX72383	Canola	nucleus	21.7	26.55
Solyc08g065420.2.1	Tomato	nucleus	26.58	26.3
KRH61499	Soybean	nucleus	26.58	25.57
TraesCS4A01G289500.1	Wheat	nucleus	15.37	22.85
CDX68925	Canola	cytosol	7.41	22.65
TraesCS7A01G022600.1	Wheat	nucleus	17.36	19.88
TraesCS4A01G469900.1	Wheat	nucleus	17.54	19.56
TraesCS1A01G183400.1	Wheat	nucleus	18.26	17.24
TraesCS4A01G289400.1	Wheat	nucleus	19.17	16.61
TraesCS1A01G281100.1	Wheat	nucleus	17.0	16.38
TraesCS4A01G022700.1	Wheat	nucleus	17.36	16.24
CDX68906	Canola	nucleus	7.59	16.22
TraesCS5A01G514700.1	Wheat	nucleus	17.72	16.2
TraesCS5A01G007800.1	Wheat	nucleus	18.63	15.85
TraesCS4A01G200800.1	Wheat	nucleus	18.99	15.81
TraesCS4A01G252100.2	Wheat	nucleus	20.98	15.05
TraesCS3A01G363900.1	Wheat	nucleus	16.09	14.17

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	PFAM:PF05920	PFAM:PF07526
InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF200	SMART:SM00389	SMART:SM00574
SUPFAM:SSF46689	EnsemblPlantsGene:TraesCS7A01G358300	EnsemblPlants:TraesCS7A01G358300.1	TIGR:cd00086	SEG:seg	:

Description

No Description!

Coordinates

chr7A:-:528359023..528361065

Molecular Weight (calculated)

58951.1 Da

IEP (calculated)

6.406

GRAVY (calculated)

-0.310

Length

553 amino acids

Sequence
(BLAST)

001: MSSNPSYHQQ LGLDAMNTCF FGGSSMIGSE APFFYPGMPH DAGFGSGGAD VAAHFMASSA MVTSPANQLV WPAAAPSQDS HQASMSTEEM NDDAYAVAGE
101: SCSTVHSMLP SASADFFQYG SGVVTIAQPS KMAKLVAGEP HCGWLYDGPS AASTHQPYYL TAFSGGSDFP DAVAGAASGL SLRLGAQSSS VTMASIPEQS
201: SEVSCSGLTH VNSEGFGYQQ PQAVRAHAGA GAGLFHLPPY GDVGAGDDEL RHVYPQMYSR PPHFSQVLPR SGYAHIAQEL LNGFAGCVLK DLAEMPDDSV
301: SGIGSEASLL LSSSCSARTP SSVSSNQLML PSDEGSADGG RWMEAQRVRN DLLKLLQLMD QRCNRCFDDI QTTASKFSSV VAHPGGGGGG AIAPPPFAQR
401: AMSAVYRRLR KRITGLIVAV AQRSGGGGGG EPSSLADKER SWESAFIQKH WALQQLRRGD QQSWRPQRGL PEKSVAVLKA WMFENFLRPY PKDHEKDMLA
501: ARSGLSRSQV SNWFINARVR LWKPMIEEMY EELKRSSGRG GDAELPSSKD VVG

Best Arabidopsis Sequence Match ( AT4G32980.1 )
(BLAST)

001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK

Arabidopsis Description

ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.