Factsheet for Os06t0562300-00

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0182800-01
Os03t0123500-02
Os06t0646600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32980.1	Os03t0123500-02	AT1G62990.1	15781858
AT4G32980.1	Os02t0182800-01	AT5G11060.1	15781858
AT4G32980.1	Os06t0646600-01	AT5G11060.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7A01G358300.1	Wheat	nucleus	56.51	55.7
TraesCS7D01G364500.1	Wheat	nucleus	55.96	55.45
TraesCS7B01G269400.1	Wheat	nucleus	55.6	54.89
Zm00001d046223_P006	Maize	nucleus	45.5	50.51
HORVU7Hr1G088090.4	Barley	nucleus	50.64	49.82
KXG20197	Sorghum	nucleus	44.4	48.99
Os02t0226600-01	Rice	nucleus	41.83	42.3
CDX75307	Canola	nucleus	16.15	39.64
CDX75313	Canola	nucleus	23.49	27.47
Bra011403.1-P	Field mustard	nucleus	23.3	27.25
VIT_04s0008g00880.t01	Wine grape	nucleus	28.99	26.83
CDX72383	Canola	nucleus	21.83	26.33
Bra037031.1-P	Field mustard	nucleus	21.1	26.32
CDX68927	Canola	nucleus	22.2	26.25
AT4G32980.1	Thale cress	nucleus	22.75	26.22
GSMUA_Achr2P19430_001	Banana	nucleus	25.87	26.06
CDY13511	Canola	nucleus	20.55	25.63
KRH52190	Soybean	nucleus	25.69	25.5
GSMUA_AchrUn_...	Banana	nucleus	27.16	24.96
KRH05496	Soybean	nucleus	25.69	24.52
Os03t0680700-00	Rice	nucleus	15.23	23.99
KRH61499	Soybean	nucleus	25.14	23.83
PGSC0003DMT400076995	Potato	nucleus	23.12	23.33
Solyc08g065420.2.1	Tomato	nucleus	23.49	22.9
CDX68925	Canola	cytosol	6.61	19.89
Os11t0158600-00	Rice	nucleus	14.13	18.33
Os03t0165300-02	Rice	endoplasmic reticulum, vacuole	19.63	17.46
Os03t0124000-01	Rice	nucleus	18.53	17.09
Os12t0636200-01	Rice	nucleus	19.82	16.69
Os03t0680800-02	Rice	nucleus	20.18	16.3
Os06t0108900-02	Rice	nucleus	15.78	16.23
Os10t0534900-01	Rice	nucleus	17.43	16.21
Os05t0455200-01	Rice	nucleus	16.15	15.17
Os01t0848400-01	Rice	nucleus	15.96	14.22
Os11t0158832-00	Rice	nucleus	6.79	14.07
Os03t0732100-01	Rice	nucleus	20.18	13.92
CDX68906	Canola	nucleus	6.61	13.9

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	EntrezGene:4341309	ProteinID:BAF19789.2	ProteinID:BAS98257.1	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	EnsemblPlantsGene:Os06g0562300
EnsemblPlants:Os06t0562300-00	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850
PANTHER:PTHR11850:SF200	UniProt:Q0DBI4	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI0001B66C1C	RefSeq:XP_015641753.1
RefSeq:XP_015641754.1	SEG:seg	:	:	:	:

Description

Similar to BEL1-type homeodomain protein. (Os06t0562300-00)

Coordinates

chr6:-:21564071..21566577

Molecular Weight (calculated)

55700.1 Da

IEP (calculated)

6.507

GRAVY (calculated)

-0.048

Length

545 amino acids

Sequence
(BLAST)

001: MSTSSNPSYH QLGLDAISCC FVAGGGGAEA AAPFFGFGFG DVDGEFLVAS PVAAVGDELA CAVPLRRPQG SVSEEEVNAA AVAAAAAGGA ESCSTVHSVL
101: GSVEFGCGTS SGVTIAQASR MGRLAGEAPC GDAGGGGWIY GGSGIAPLHG AYYLSGFSSG AGAGFLSPFA ASSVAAAAPA ASELSLRLGA TKCSSPSSMA
201: NASSEVSCSG LTHVSSGGGL GYHQAAAAGA GAALFHPTHG DDAAAAAAGE LRQAYHSRAP PHFSQVVSRS AVLAHVAQEL LNGFVACLLQ DVAADAASGV
301: DGGEASQALS SGFSARITTA PTEDASPGSG GARWAAEAQR LRKLLQLVDE KCNQCVEEMQ STAARFNSMV RSTGGGGGGL TAAFAGRAVA AAYRRVRRRV
401: MGQLVAAATA RSSSSAAAAA LEEKERSWES SFIQKHWAMQ QLRRGDQQSW RPQRGLPEKS VAVLKAWMFE NFLRPYPKDS EKDMLAARSG LSRSQVSNWF
501: INARVRLWKP MIEDMYEELK KTSGGSDGAA EIEHLSSKDV LSLES

Best Arabidopsis Sequence Match ( AT4G32980.1 )
(BLAST)

001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK

Arabidopsis Description

ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.