Factsheet for TraesCS7B01G269400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G135600.1
TraesCS4B01G346100.1
TraesCS4D01G341000.1
TraesCS5A01G515000.1
TraesCS5B01G454600.1
TraesCS6A01G145500.1
TraesCS6B01G173900.1
TraesCS6D01G134800.1
TraesCS7A01G511800.2
TraesCS7B01G423100.2
TraesCS7D01G501000.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G32980.1	TraesCS4B01G346100.1	AT1G62990.1	15781858
AT4G32980.1	TraesCS4D01G341000.1	AT1G62990.1	15781858
AT4G32980.1	TraesCS5A01G515000.1	AT1G62990.1	15781858
AT4G32980.1	TraesCS1B01G135600.1	AT5G11060.1	15781858
AT4G32980.1	TraesCS5B01G454600.1	AT5G11060.1	15781858
AT4G32980.1	TraesCS6A01G145500.1	AT5G11060.1	15781858
AT4G32980.1	TraesCS6B01G173900.1	AT5G11060.1	15781858
AT4G32980.1	TraesCS6D01G134800.1	AT5G11060.1	15781858
AT4G32980.1	TraesCS7A01G511800.2	AT5G11060.1	15781858
AT4G32980.1	TraesCS7B01G423100.2	AT5G11060.1	15781858
AT4G32980.1	TraesCS7D01G501000.1	AT5G11060.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G364500.1	Wheat	nucleus	96.74	97.09
TraesCS7A01G358300.1	Wheat	nucleus	93.12	92.95
HORVU7Hr1G088090.4	Barley	nucleus	83.7	83.39
Os06t0562300-00	Rice	nucleus	54.89	55.6
Zm00001d046223_P006	Maize	nucleus	47.46	53.36
KXG20197	Sorghum	nucleus	47.64	53.24
CDX75307	Canola	nucleus	16.85	41.89
Bra037031.1-P	Field mustard	nucleus	22.64	28.6
VIT_04s0008g00880.t01	Wine grape	nucleus	30.25	28.35
CDX75313	Canola	nucleus	23.73	28.11
CDY13511	Canola	nucleus	22.1	27.92
GSMUA_Achr2P19430_001	Banana	nucleus	27.36	27.91
Bra011403.1-P	Field mustard	nucleus	23.55	27.9
GSMUA_AchrUn_...	Banana	nucleus	29.89	27.82
CDX68927	Canola	nucleus	23.19	27.77
AT4G32980.1	Thale cress	nucleus	23.19	27.06
KRH52190	Soybean	nucleus	26.81	26.96
KRH05496	Soybean	nucleus	27.72	26.8
CDX72383	Canola	nucleus	21.92	26.77
PGSC0003DMT400076995	Potato	nucleus	25.91	26.48
KRH61499	Soybean	nucleus	26.99	25.91
Solyc08g065420.2.1	Tomato	nucleus	25.91	25.58
TraesCS4B01G025400.1	Wheat	nucleus	14.86	21.98
CDX68925	Canola	cytosol	7.07	21.55
TraesCS4B01G025500.1	Wheat	nucleus	19.2	16.59
TraesCS1B01G191800.1	Wheat	nucleus	17.57	16.58
TraesCS4B01G114600.1	Wheat	nucleus	19.38	16.16
TraesCS1B01G290200.1	Wheat	nucleus	16.85	16.03
CDX68906	Canola	nucleus	7.43	15.83
TraesCS4B01G280700.1	Wheat	nucleus	16.85	15.82
TraesCS4B01G345600.1	Wheat	nucleus	17.21	15.55
TraesCS5B01G006400.1	Wheat	nucleus	18.66	15.3
TraesCS4B01G063100.1	Wheat	nucleus, plastid	20.11	14.98
TraesCS3B01G396100.1	Wheat	nucleus	16.12	14.35

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	PFAM:PF05920	PFAM:PF07526
InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF200	SMART:SM00389	SMART:SM00574
SUPFAM:SSF46689	EnsemblPlantsGene:TraesCS7B01G269400	EnsemblPlants:TraesCS7B01G269400.1	TIGR:cd00086	SEG:seg	:

Description

No Description!

Coordinates

chr7B:+:494216439..494218470

Molecular Weight (calculated)

59349.5 Da

IEP (calculated)

6.508

GRAVY (calculated)

-0.361

Length

552 amino acids

Sequence
(BLAST)

001: MSSNPSYQQQ LGFDAMNTCF FGGSGMIGSS EAPFFYPSMP HDAGFASGGA EVAAHLVASS AVMVTSPANQ LVWSAAPSRD SHQASMSTDE MNDDAYAVAG
101: ESCSTVHSML PSASGSADFF QYGPGEVTIA QPSKMAKLIS GEPHCGWLYD GPSAASTHQP YYPTAFSGGG DLPDAVAGAA SGLSLRLGAQ SSSVTMASMP
201: EQSSEVSCSG LTHVNSEGFG YQQPQAVRAH AGAGQFHLPP YGDVGAGDYE LRHVYPQMYS RPPHFSQVLP RSGYAHIAQE LLNGFAGCLL KDVAEMTDDS
301: VSDIGSEASL LLSSSCSART PSSVSSNHLM LPSEEHSADG GRWMEAQRVR NDLLKLLQLM DQRCNRCFDD IQTTASKFSS MVAHPGGGGG AIAPPPFAQR
401: ALSAVYRRLR KRITGLIVAV AQRSGGHGEP SSLADKERSW ESSFIQKHWA LQQLRRGDQQ SWRPQRGLPE KSVAVLKAWM FENFLRPYPK DHEKDMLAAR
501: SGLSRSQVSN WFINARVRLW KPMIEEMYEE LKRSSGRSGD AAELPSSKDV VG

Best Arabidopsis Sequence Match ( AT4G32980.1 )
(BLAST)

001: MDNNNNNNTF SSLDNVMTNQ NPLLMDFIPS REDSTSFSTM LPWNTIRSDP LQMGGFDIFN SMLTNKYLSS SPRSIDVQDN RNVEFMAPPP HPPPLHPLDH
101: LRHYDDSSNN MWGFEANSEF QAFSGVVGPS EPMMSTFGEE DFPFLISNKR NNELSLSLAS DVSDECSEIS LCAATRLASE QASCSSKDIS NNVVTQGFSQ
201: LIFGSKYLHS VQEILSHFAA YSLDYSSRGT ESGAASSAFT SRFENITEFL DGDSNNSEAG FGSTFQRRAL EAKKTHLLDL LQMVDDRYSH CVDEIHTVIS
301: AFHAATELDP QLHTRFALQT VSFLYKNLRE RICKKIISMG SVLERGKDKT QETSMFHQHC LLQQLKRKNH QIWRPQRGLP EKSVSVLRNW MFQNFLHPYP
401: KDSEKHLLAI RSGLTRSQVS NWFINARVRL WKPMIEEMYA EMNKRKLNNS HIQPNGPTLR MPKSVMMSQA MHK

Arabidopsis Description

ATH1Homeobox protein ATH1 [Source:UniProtKB/Swiss-Prot;Acc:P48731]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.