Factsheet for TraesCS4B01G063100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G252100.2	Wheat	nucleus	97.17	93.39
TraesCS4D01G062100.1	Wheat	nucleus	97.84	90.29
HORVU4Hr1G010430.6	Barley	nucleus	95.01	87.02
EER93512	Sorghum	nucleus, plastid	84.48	81.3
Zm00001d033898_P002	Maize	nucleus	81.92	80.4
Os03t0732100-01	Rice	nucleus	81.92	76.84
GSMUA_Achr5P08840_001	Banana	nucleus	25.91	60.57
Bra032147.1-P	Field mustard	nucleus	24.97	57.81
Bra011713.1-P	Field mustard	nucleus	26.18	56.89
Bra010577.1-P	Field mustard	nucleus	25.1	56.53
VIT_18s0001g11800.t01	Wine grape	nucleus	25.24	53.58
PGSC0003DMT400056612	Potato	nucleus	21.19	53.22
KRH76894	Soybean	nucleus	45.61	47.61
KRH28575	Soybean	nucleus	44.94	47.23
KRH69971	Soybean	nucleus	42.65	46.88
Solyc02g089940.2.1	Tomato	nucleus	45.34	46.28
PGSC0003DMT400026172	Potato	nucleus	46.02	46.21
CDX76849	Canola	nucleus	36.84	45.42
CDY46061	Canola	nucleus	37.11	45.23
Bra039212.1-P	Field mustard	nucleus	36.98	45.07
Solyc02g065490.2.1	Tomato	nucleus	37.65	44.71
CDX69252	Canola	nucleus	40.22	44.68
KRH08329	Soybean	nucleus	46.83	44.66
CDX75604	Canola	nucleus	40.08	44.39
CDY39669	Canola	nucleus	38.19	43.88
CDY62523	Canola	nucleus	38.19	43.67
VIT_04s0023g01020.t01	Wine grape	nucleus	49.66	43.5
CDY22463	Canola	nucleus	39.14	43.28
CDY24765	Canola	nucleus	38.6	42.88
AT2G23760.4	Thale cress	nucleus	37.65	41.09
AT4G36870.2	Thale cress	nucleus	40.76	40.87
Solyc04g079830.2.1	Tomato	nucleus	36.17	38.73
TraesCS1B01G191800.1	Wheat	nucleus	24.7	31.28
TraesCS4B01G025500.1	Wheat	nucleus	26.45	30.67
TraesCS1B01G290200.1	Wheat	nucleus	23.62	30.17
TraesCS4B01G025400.1	Wheat	nucleus	14.57	28.95
TraesCS4B01G280700.1	Wheat	nucleus	22.94	28.91
TraesCS4B01G345600.1	Wheat	nucleus	23.75	28.81
TraesCS5B01G006400.1	Wheat	nucleus	26.05	28.68
TraesCS4B01G114600.1	Wheat	nucleus	24.97	27.95
TraesCS3B01G396100.1	Wheat	nucleus	22.4	26.77
TraesCS7B01G269400.1	Wheat	nucleus	14.98	20.11

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	PFAM:PF05920	PFAM:PF07526
InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF136	InterPro:Peptidase_S1_PA	SMART:SM00389
SMART:SM00574	SUPFAM:SSF46689	SUPFAM:SSF50494	EnsemblPlantsGene:TraesCS4B01G063100	EnsemblPlants:TraesCS4B01G063100.1	TIGR:cd00086
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr4B:+:55304680..55314381

Molecular Weight (calculated)

78265.0 Da

IEP (calculated)

6.912

GRAVY (calculated)

-0.579

Length

741 amino acids

Sequence
(BLAST)

001: MGIAAPPCQA TTQHVSSTPK SSAAIYGGRP ATASSMSHSQ GFHQGSSGVY GFSSDGFDRP GSSQDHDQQQ EQQHHVAQQS RRDKMRVQGF DPAAAAAHGL
101: LPIDGDEHVE PGAMYDHAAA AGASNMLAEM FNFSAQTPSG PSATELLASQ MNANYRFGFR QQAPGAVVAG LPGDGGWFGS GGPGRAGVVL GGANLLGETS
201: SPKQQGGMAG LATDPAAAMQ LFLMNPQQQQ QSRSSPTSPP PSDAQSAIQH HEAFQAYGNA ASSFGGGGAG VVEGQGLSLS LSPSLQQLEM AKQAEELRVR
301: DGVLYFNRQQ QQLHVGYGPA GVAGVLRNSK YTRAAQELLD EFCSVGRGQT IKGGGRGAGG SSSNPNASKG GPSSSGAGQS PSSASREPPQ LSPADRFEQQ
401: RKKAKLISML DEVDRRYNHY CDQMQMVVNF FDSVMGFGAA TPYTALAQKA MSRHFRCLKD AIAAQLRHTC ELLGEKDAGT SSGLTKGETP RLRAIDQSLR
501: QQRAFHHMGM MEQEAWRPQR GLPERSVSIL RSWLFEHFLH PYPSDADKHL LARQTGLSRN QVSNWFINAR VRLWKPMIEE MYQQETKELE GSSAGGGGGG
601: PESGNDPSGA DDLHSPTTTG AHQHPQQQVV MQHGDGRYGQ QEHGMSGVHP HKLDPGAGPS VADAAFVGLD PAELLGGDAH VGAADDLYGR FEPGVRMRYG
701: PATTGSVSGN VSLTLGLQHA GAGNQGPDGS GRFSLRDYNG C

Best Arabidopsis Sequence Match ( AT4G36870.1 )
(BLAST)

001: MGITKTSPNT TILLKTFHNN SMSQDYHHHH HHNQHQGGIF NFSNGFDRSD SPNLTTQQKQ EHQRVEMDEE SSVAGGRIPV YESAGMLSEM FNFPGSSGGG
101: RDLDLGQSFR SNRQLLEEQH QNIPAMNATD SATATAAAMQ LFLMNPPPPQ QPPSPSSTTS PRSHHNSSTL HMLLPSPSTN TTHHQNYTNH MSMHQLPHQH
201: HQQISTWQSS PDHHHHHHNS QTEIGTVHVE NSGGHGGQGL SLSLSSSLEA AAKAEEYRNI YYGANSSNAS PHHQYNQFKT LLANSSQHHH QVLNQFRSSP
301: AASSSSMAAV NILRNSRYTT AAQELLEEFC SVGRGFLKKN KLGNSSNPNT CGGDGGGSSP SSAGANKEHP PLSASDRIEH QRRKVKLLTM LEEVDRRYNH
401: YCEQMQMVVN SFDIVMGHGA ALPYTALAQK AMSRHFRCLK DAVAAQLKQS CELLGDKDAA GISSSGLTKG ETPRLRLLEQ SLRQNRAFHQ MGMMEQEAWR
501: PQRGLPERSV NILRAWLFEH FLHPYPSDAD KHLLARQTGL SRNQVSNWFI NARVRLWKPM VEEMYQQESK EREREEELEE NEEDQETKNS NDDKSTKSNN
601: NESNFTAVRT TSQTPTTTAP DASDADAAVA TGHRLRSNIN AYENDASSLL LPSSYSNAAA PAAVSDDLNS RYGGSDAFSA VATCQQSVGG FDDADMDGVN
701: VIRFGTNPTG DVSLTLGLRH AGNMPDKDAS FCVREFGGF

Arabidopsis Description

BLH2BEL1-like homeodomain protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.