Factsheet for PGSC0003DMT400056612

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P14670_001	Banana	nucleus	53.22	52.86
GSMUA_Achr4P07450_001	Banana	nucleus	51.86	50.49
GSMUA_Achr5P08840_001	Banana	nucleus	52.54	48.9
GSMUA_Achr1P26900_001	Banana	nucleus	50.17	37.19
Solyc02g065490.2.1	Tomato	nucleus	65.76	31.09
PGSC0003DMT400026172	Potato	nucleus	67.8	27.1
GSMUA_Achr7P27440_001	Banana	nucleus	50.51	21.78
TraesCS4B01G063100.1	Wheat	nucleus, plastid	53.22	21.19
EER93512	Sorghum	nucleus, plastid	54.92	21.04
Zm00001d033898_P002	Maize	nucleus	53.56	20.93
PGSC0003DMT400032122	Potato	nucleus	43.73	20.38
TraesCS4A01G252100.2	Wheat	nucleus	52.88	20.23
Os03t0732100-01	Rice	nucleus	53.56	20.0
TraesCS4D01G062100.1	Wheat	nucleus	53.22	19.55
HORVU4Hr1G010430.6	Barley	nucleus	53.22	19.41
PGSC0003DMT400062353	Potato	nucleus	32.88	19.21
PGSC0003DMT400009609	Potato	nucleus	27.12	18.91
PGSC0003DMT400015183	Potato	nucleus	39.66	17.11
PGSC0003DMT400054945	Potato	nucleus	40.34	16.9
PGSC0003DMT400079517	Potato	nucleus	36.61	16.74
PGSC0003DMT400049235	Potato	nucleus	32.2	16.52
PGSC0003DMT400050527	Potato	nucleus	39.32	16.43
PGSC0003DMT400009610	Potato	nucleus	35.59	15.88
PGSC0003DMT400020825	Potato	nucleus	35.59	15.17
PGSC0003DMT400076995	Potato	nucleus	21.69	11.85

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	ProteinID:AAN03625	ProteinID:AAN03625.1	EMBL:AF406701	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:M1BZP0
PFAM:PF05920	PFAM:PF07526	EnsemblPlantsGene:PGSC0003DMG400022011	PGSC:PGSC0003DMG400022011	EnsemblPlants:PGSC0003DMT400056612	InterPro:POX_dom
PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF136	SMART:SM00389	SUPFAM:SSF46689	UniParc:UPI000294ECB5
SEG:seg	:	:	:	:	:

Description

Homeodomain protein [Source:PGSC_GENE;Acc:PGSC0003DMG400022011]

Coordinates

chr2:-:24575906..24581104

Molecular Weight (calculated)

32962.7 Da

IEP (calculated)

6.726

GRAVY (calculated)

-0.618

Length

295 amino acids

Sequence
(BLAST)

001: MGFGAAVPYT ALAQKAMSRH FKCLKDGVAA QLKKTCEALG EKDASSSSGL TKGETPRLKV LEQSLRQQRA FQQMGMMEQE AWRPQRGLPE RSVNILRAWL
101: FEHFLHPYPS DADKHLLARQ TGLSRNQVAN WFINARVRLW KPMVEEMYQR EVNEDDDDDM LENQNRTNTQ TPTPNIIITT NSNITETKSA ATATIASDKK
201: PQINVSENDP SIVAMNTHYS SSMPTQLTNF STIQDESDHI LYRRSGAEYG TTNMASNSEI GSNMITFGTT TASDVSLTLG LRHAGNLPEN THFFG

Best Arabidopsis Sequence Match ( AT4G36870.1 )
(BLAST)

001: MGITKTSPNT TILLKTFHNN SMSQDYHHHH HHNQHQGGIF NFSNGFDRSD SPNLTTQQKQ EHQRVEMDEE SSVAGGRIPV YESAGMLSEM FNFPGSSGGG
101: RDLDLGQSFR SNRQLLEEQH QNIPAMNATD SATATAAAMQ LFLMNPPPPQ QPPSPSSTTS PRSHHNSSTL HMLLPSPSTN TTHHQNYTNH MSMHQLPHQH
201: HQQISTWQSS PDHHHHHHNS QTEIGTVHVE NSGGHGGQGL SLSLSSSLEA AAKAEEYRNI YYGANSSNAS PHHQYNQFKT LLANSSQHHH QVLNQFRSSP
301: AASSSSMAAV NILRNSRYTT AAQELLEEFC SVGRGFLKKN KLGNSSNPNT CGGDGGGSSP SSAGANKEHP PLSASDRIEH QRRKVKLLTM LEEVDRRYNH
401: YCEQMQMVVN SFDIVMGHGA ALPYTALAQK AMSRHFRCLK DAVAAQLKQS CELLGDKDAA GISSSGLTKG ETPRLRLLEQ SLRQNRAFHQ MGMMEQEAWR
501: PQRGLPERSV NILRAWLFEH FLHPYPSDAD KHLLARQTGL SRNQVSNWFI NARVRLWKPM VEEMYQQESK EREREEELEE NEEDQETKNS NDDKSTKSNN
601: NESNFTAVRT TSQTPTTTAP DASDADAAVA TGHRLRSNIN AYENDASSLL LPSSYSNAAA PAAVSDDLNS RYGGSDAFSA VATCQQSVGG FDDADMDGVN
701: VIRFGTNPTG DVSLTLGLRH AGNMPDKDAS FCVREFGGF

Arabidopsis Description

BLH2BEL1-like homeodomain protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.