Factsheet for VIT_04s0023g01020.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH28575	Soybean	nucleus	60.28	72.34
KRH76894	Soybean	nucleus	60.52	72.11
KRH69971	Soybean	nucleus	54.85	68.84
VIT_18s0001g11800.t01	Wine grape	nucleus	27.9	67.62
KRH08329	Soybean	nucleus	61.94	67.44
Bra032147.1-P	Field mustard	nucleus	24.94	65.94
Solyc02g089940.2.1	Tomato	nucleus	56.5	65.84
PGSC0003DMT400026172	Potato	nucleus	57.09	65.45
GSMUA_Achr5P08840_001	Banana	nucleus	24.23	64.67
GSMUA_Achr4P14670_001	Banana	nucleus	22.1	62.96
GSMUA_Achr4P07450_001	Banana	nucleus	22.34	62.38
GSMUA_Achr1P26900_001	Banana	nucleus	28.49	60.55
CDX76849	Canola	nucleus	41.25	58.07
CDY46061	Canola	nucleus	41.49	57.73
Bra039212.1-P	Field mustard	nucleus	41.25	57.4
GSMUA_Achr7P27440_001	Banana	nucleus	45.15	55.85
CDY39669	Canola	nucleus	42.32	55.5
CDY62523	Canola	nucleus	42.44	55.4
AT2G23760.4	Thale cress	nucleus	42.44	52.87
TraesCS4B01G063100.1	Wheat	nucleus, plastid	43.5	49.66
Zm00001d033898_P002	Maize	nucleus	44.21	49.54
EER93512	Sorghum	nucleus, plastid	44.56	48.96
TraesCS4A01G252100.2	Wheat	nucleus	44.21	48.51
Os03t0732100-01	Rice	nucleus	45.04	48.23
TraesCS4D01G062100.1	Wheat	nucleus	44.33	46.7
HORVU4Hr1G010430.6	Barley	nucleus	43.97	45.98
VIT_02s0025g00200.t01	Wine grape	nucleus	27.9	36.53
VIT_08s0007g01290.t01	Wine grape	nucleus	24.47	32.24
VIT_18s0001g13130.t01	Wine grape	nucleus	17.26	31.06
VIT_13s0019g02450.t01	Wine grape	nucleus	17.61	29.92
VIT_08s0105g00230.t01	Wine grape	nucleus	21.51	29.17
VIT_06s0009g00410.t01	Wine grape	nucleus	24.35	28.3
VIT_03s0038g00050.t01	Wine grape	nucleus	22.93	28.08
VIT_06s0004g02580.t01	Wine grape	nucleus	23.64	26.67
VIT_18s0001g13150.t01	Wine grape	nucleus	21.51	26.07
VIT_04s0008g00880.t01	Wine grape	nucleus	14.66	21.05

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100261554	wikigene:100261554	MapMan:15.5.3.5	ProteinID:CCB44493	ProteinID:CCB44493.1
UniProt:F6GX07	EMBL:FN594959	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain
InterPro:Homeobox_dom	InterPro:IPR001356	EntrezGene:LOC100261554	wikigene:LOC100261554	PFAM:PF05920	PFAM:PF07526
InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF136	SMART:SM00389	SMART:SM00574
SUPFAM:SSF46689	UniParc:UPI000210A029	ArrayExpress:VIT_04s0023g01020	EnsemblPlantsGene:VIT_04s0023g01020	EnsemblPlants:VIT_04s0023g01020.t01	RefSeq:XP_002269670
RefSeq:XP_002269670.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4:-:17429935..17435841

Molecular Weight (calculated)

91787.8 Da

IEP (calculated)

8.417

GRAVY (calculated)

-0.597

Length

846 amino acids

Sequence
(BLAST)

001: MSKAENEKKG GQKGKIEKAP TKTHLMPSLF LFTTPPLPPV FSHSKVHNPI PIAHKSNFAN SMSQDFHQGI FSFSNGFERS AVTHQEQQQQ QQHITQQIRR
101: DKLRVQGFEP PPPLVAIEEE ESGGLPVYET AGMLSEMFNF GPGATTAAEL LEHQLPSNYR NPRPATAVTG VSNSEWYGSR QGMVGGLGPL GDSKNQNVNN
201: RDSLAQHHHQ ISSINADSAA AMQLFLMNPQ PRSPSPPPQP HPHPHPPATS STLHMLLPNQ STSLQGFATA SAPGGGAFGA SVIPPSQFTW VPDSGHESGN
301: NPSEIGGIVE GQGLSLSLSS SLQHLEAAKA EELRMGDSGM LFYGQGGGSS SAQYPYKSLG GHQQPLHLQG GVGHNHQVHV GFGSSLGAVN VMRNSKYVKA
401: AQELLEEFCS VGRGQFKKNK FGRHNTNPNS NPGGGSAGGG GSSSSSKDLP PLSAADRIEH QRRKVKLLSM LDEAWKTNRK FRQVSMNILY TRVDRRYNHY
501: CEQMQMVVNS FDLVMGFGAA VPYTALAQKA MSRHFRCLKD AIAVQLKHSC ELLGEKDPSG TSGVTKGETP RLRLLEQSLR QQRAFHQMGM MEQEAWRPQR
601: GLPERSVNIL RSWLFEHFLH PYPSDADKHL LARQTGLSRN QVSNWFINAR VRLWKPMVEE MYQQETKEEE GSEEREVNQL QSSGLAQTPT PSTGAGGAAA
701: ATASTTPTTT TTATGKRSEI NAADGDPSLI AINRQCFSEN QAKQATSTIP TTTSTSADVS PPPPVSQCFP TTHDSDLHHR LPVDDTCRRG SLVSSDFGTT
801: STNPDIGSTL IRFGTTAGDV SLTLGLRHAG NLPDKSPFSV RDFGGC

Best Arabidopsis Sequence Match ( AT4G36870.1 )
(BLAST)

001: MGITKTSPNT TILLKTFHNN SMSQDYHHHH HHNQHQGGIF NFSNGFDRSD SPNLTTQQKQ EHQRVEMDEE SSVAGGRIPV YESAGMLSEM FNFPGSSGGG
101: RDLDLGQSFR SNRQLLEEQH QNIPAMNATD SATATAAAMQ LFLMNPPPPQ QPPSPSSTTS PRSHHNSSTL HMLLPSPSTN TTHHQNYTNH MSMHQLPHQH
201: HQQISTWQSS PDHHHHHHNS QTEIGTVHVE NSGGHGGQGL SLSLSSSLEA AAKAEEYRNI YYGANSSNAS PHHQYNQFKT LLANSSQHHH QVLNQFRSSP
301: AASSSSMAAV NILRNSRYTT AAQELLEEFC SVGRGFLKKN KLGNSSNPNT CGGDGGGSSP SSAGANKEHP PLSASDRIEH QRRKVKLLTM LEEVDRRYNH
401: YCEQMQMVVN SFDIVMGHGA ALPYTALAQK AMSRHFRCLK DAVAAQLKQS CELLGDKDAA GISSSGLTKG ETPRLRLLEQ SLRQNRAFHQ MGMMEQEAWR
501: PQRGLPERSV NILRAWLFEH FLHPYPSDAD KHLLARQTGL SRNQVSNWFI NARVRLWKPM VEEMYQQESK EREREEELEE NEEDQETKNS NDDKSTKSNN
601: NESNFTAVRT TSQTPTTTAP DASDADAAVA TGHRLRSNIN AYENDASSLL LPSSYSNAAA PAAVSDDLNS RYGGSDAFSA VATCQQSVGG FDDADMDGVN
701: VIRFGTNPTG DVSLTLGLRH AGNMPDKDAS FCVREFGGF

Arabidopsis Description

BLH2BEL1-like homeodomain protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.