CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH08329	Soybean	nucleus	93.62	81.21
KRH28575	Soybean	nucleus	62.76	60.0
KRH76894	Soybean	nucleus	62.46	59.3
VIT_04s0023g01020.t01	Wine grape	nucleus	68.84	54.85
Bra032147.1-P	Field mustard	nucleus	25.82	54.38
GSMUA_Achr1P26900_001	Banana	nucleus	31.6	53.52
Solyc02g089940.2.1	Tomato	nucleus	57.42	53.31
GSMUA_Achr5P08840_001	Banana	nucleus	24.78	52.68
PGSC0003DMT400026172	Potato	nucleus	57.27	52.3
CDX76849	Canola	nucleus	45.25	50.75
GSMUA_Achr4P14670_001	Banana	nucleus	22.26	50.51
GSMUA_Achr4P07450_001	Banana	nucleus	22.7	50.49
CDY46061	Canola	nucleus	45.25	50.16
Bra039212.1-P	Field mustard	nucleus	45.25	50.16
GSMUA_Achr7P27440_001	Banana	nucleus	49.7	48.98
CDY39669	Canola	nucleus	46.29	48.37
CDY62523	Canola	nucleus	46.29	48.15
AT2G23760.4	Thale cress	nucleus	47.77	47.42
EER93512	Sorghum	nucleus, plastid	49.41	43.25
Zm00001d033898_P002	Maize	nucleus	48.22	43.05
TraesCS4B01G063100.1	Wheat	nucleus, plastid	46.88	42.65
Os03t0732100-01	Rice	nucleus	48.52	41.39
TraesCS4A01G252100.2	Wheat	nucleus	47.18	41.25
TraesCS4D01G062100.1	Wheat	nucleus	47.63	39.98
HORVU4Hr1G010430.6	Barley	nucleus	47.18	39.31
KRH61118	Soybean	nucleus	21.22	32.5
KRH51793	Soybean	nucleus	20.77	31.32
KRH27902	Soybean	nucleus	29.67	31.15
KRH77572	Soybean	nucleus	29.82	31.11
KRH59951	Soybean	nucleus	29.23	31.02
KRH41225	Soybean	nucleus	29.38	30.65
KRH51485	Soybean	nucleus	24.48	29.68
KRH26689	Soybean	nucleus	22.55	29.4
KRH00065	Soybean	nucleus	23.74	27.92
KRH65931	Soybean	nucleus	25.07	27.39
KRH75724	Soybean	nucleus	24.63	27.26
KRH22635	Soybean	nucleus	27.6	26.5
KRH32854	Soybean	nucleus	25.96	26.48
KRH72182	Soybean	nucleus	25.82	26.2
KRH05875	Soybean	nucleus	23.59	26.02
KRH15136	Soybean	nucleus	23.89	25.31
KRH68008	Soybean	nucleus	25.37	25.18
KRG96259	Soybean	nucleus	25.37	25.15
KRH51792	Soybean	nucleus	23.29	24.65
KRH60794	Soybean	nucleus	24.18	24.62
KRH61114	Soybean	nucleus	23.59	24.61
KRH25319	Soybean	nucleus	26.26	23.89
KRH30618	Soybean	nucleus	26.85	23.57
KRG88864	Soybean	nucleus	26.26	23.17
KRH25064	Soybean	nucleus	26.11	23.16
KRH22860	Soybean	nucleus	25.82	22.14
KRH26495	Soybean	nucleus	25.22	21.41
KRH52190	Soybean	nucleus	17.21	21.13
KRH61499	Soybean	nucleus	16.32	19.13
KRH05496	Soybean	nucleus	16.02	18.91

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100807143	MapMan:15.5.3.5	UniProt:A0A0R0KZM6	EMBL:ACUP02000741	EnsemblPlantsGene:GLYMA_02G060000
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
EnsemblPlants:KRH69971	ProteinID:KRH69971	ProteinID:KRH69971.1	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom
PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF136	SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689
UniParc:UPI0006ED6CE8	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:5433060..5441221

Molecular Weight (calculated)

73786.1 Da

IEP (calculated)

8.011

GRAVY (calculated)

-0.757

Length

674 amino acids

Sequence
(BLAST)

001: MGIATPSSSL PSILSHSKTQ QQIHHSNSSM SQDYHHHHQG IFSFPNGFER SAAATTMTHQ DPHQQQIRRD KVRVQGFEPP PSHQTLVPIE EDESGSLPVY
101: ETAGMLSEMF NFTPGATELL EQQQQQQQPM ATTTARAVGS GGSEWYGNRQ GMLSNLGPLG DSKNHHHHGS VNSRDSSSSS IVQNQHHHHH NHHHHQMSSI
201: NADSAAAMQL FLMNPQTTRS PSPPPPPPPS SSTLHMLLPN TFPPGSGGSF GQFTWLPDTT QEGGPSTVVE GPGHGHGQGL SLSLSSSIEA AKAEELRMGD
301: SGFLYYNQAS GGPSSYKSTL GGHHHQALLG QAHQGNVGFG AASSSTSSLG VVNALRNSKY AKAAQELLEE FCSVGRGQFK KNKFNRQLSN PSSNLGGSGG
401: GGGGASSSSS KDIPPLSAAD RIEHQRRKVK LLTMLDEVDR RYSHYCEQMH MVVNSFDMVM GFGAAVPYTA LAQKAMSRHF RCLKDAITAQ LKHSCEVLGE
501: KDGAGNSGLT KGETPRLKML EQSLRQQRAF HQMGMMEQEA WRPQRGLPER SVNILRAWLF EHFLHPYPSD ADKHLLARQT GLSRNQVSNW FINARVRLWK
601: PMVEDMYQQE LKEAEGAEED RERNQSSSNN SGHQLAQTPT PSTTASTATA PPPTQRHHQT EKDPIPKATL HSHR

Best Arabidopsis Sequence Match ( AT2G23760.2 )
(BLAST)

001: MGLATTTSSM SQDYHHHQGI FSFSNGFHRS SSTTHQEEVD ESAVVSGAQI PVYETAGMLS EMFAYPGGGG GGSGGEILDQ STKQLLEQQN RHNNNNNSTL
101: HMLLPNHHQG FAFTDENTMQ PQQQQHFTWP SSSSDHHQNR DMIGTVHVEG GKGLSLSLSS SLAAAKAEEY RSIYCAAVDG TSSSSNASAH HHQFNQFKNL
201: LLENSSSQHH HHQVVGHFGS SSSSPMAASS SIGGIYTLRN SKYTKPAQEL LEEFCSVGRG HFKKNKLSRN NSNPNTTGGG GGGGSSSSAG TANDSPPLSP
301: ADRIEHQRRK VKLLSMLEEV DRRYNHYCEQ MQMVVNSFDQ VMGYGAAVPY TTLAQKAMSR HFRCLKDAVA VQLKRSCELL GDKEAAGAAS SGLTKGETPR
401: LRLLEQSLRQ QRAFHHMGMM EQEAWRPQRG LPERSVNILR AWLFEHFLNP YPSDADKHLL ARQTGLSRNQ VSNWFINARV RLWKPMVEEM YQQEAKEREE
501: AEEENENQQQ QRRQQQTNNN DTKPNNNENN FTVITAQTPT TMTSTHHEND SSFLSSVAAA SHGGSDAFTV ATCQQDVSDF HVDGDGVNVI RFGTKQTGDV
601: SLTLGLRHSG NIPDKNTSFS VRDFGDF

Arabidopsis Description

BLH4BEL1-like homeodomain 4 [Source:TAIR;Acc:AT2G23760]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.