CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH16959
KRH53667
KRH61471
KRH64261

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27990.1	KRH16959	AT3G49580.1	21798944
AT2G27990.1	KRH53667	AT3G49580.1	21798944
AT2G27990.1	KRH64261	AT3G49580.1	21798944
AT2G27990.1	KRH61471	AT4G08150.1	15781858
AT2G27990.1	KRH16959	AT5G24660.1	21798944
AT2G27990.1	KRH53667	AT5G24660.1	21798944
AT2G27990.1	KRH64261	AT5G24660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22860	Soybean	nucleus	88.67	89.57
KRH25064	Soybean	nucleus	56.55	59.08
KRH30618	Soybean	nucleus	56.17	58.07
GSMUA_Achr11P...	Banana	plastid	18.26	55.13
VIT_06s0004g02580.t01	Wine grape	nucleus	42.07	44.53
Solyc11g069890.1.1	Tomato	golgi	31.36	42.93
PGSC0003DMT400020825	Potato	nucleus	36.4	41.76
AT2G27990.1	Thale cress	nucleus	24.31	33.05
GSMUA_Achr10P...	Banana	nucleus	30.1	31.7
KRH00065	Soybean	nucleus	21.91	30.37
KRH75724	Soybean	nucleus	23.17	30.21
KRH65931	Soybean	nucleus	23.3	29.98
KRH61118	Soybean	nucleus	15.87	28.64
KRH51793	Soybean	nucleus	15.87	28.19
KRH26689	Soybean	nucleus	18.26	28.05
KRH27902	Soybean	nucleus	22.67	28.04
KRH59951	Soybean	nucleus	22.42	28.03
KRH77572	Soybean	nucleus	22.67	27.86
KRH41225	Soybean	nucleus	22.29	27.4
KRH28575	Soybean	nucleus	23.68	26.67
KRH76894	Soybean	nucleus	23.8	26.62
KRH72182	Soybean	nucleus	21.66	25.9
KRH32854	Soybean	nucleus	21.54	25.87
KRH05875	Soybean	nucleus	19.77	25.7
KRH61114	Soybean	nucleus	20.65	25.39
KRH68008	Soybean	nucleus	21.66	25.33
KRH51792	Soybean	nucleus	20.28	25.27
KRH69971	Soybean	nucleus	21.41	25.22
KRH15136	Soybean	nucleus	20.15	25.16
KRG96259	Soybean	nucleus	21.16	24.71
KRH22635	Soybean	nucleus	21.66	24.5
KRH51485	Soybean	nucleus	17.13	24.46
KRH60794	Soybean	nucleus	20.28	24.32
KRH08329	Soybean	nucleus	23.68	24.2
KRH25319	Soybean	nucleus	21.54	23.08
KRG88864	Soybean	nucleus	21.41	22.25
KRH52190	Soybean	nucleus	14.61	21.13
KRH61499	Soybean	nucleus	14.48	20.0
KRH05496	Soybean	nucleus	14.23	19.79

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100790583	MapMan:15.5.3.5	EMBL:ACUP02007716	EnsemblPlantsGene:GLYMA_12G176400	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:K7LVK3
EnsemblPlants:KRH26495	ProteinID:KRH26495	ProteinID:KRH26495.1	ProteinID:KRH26496.1	ProteinID:KRH26497.1	PFAM:PF05920
PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF125	SMART:SM00389
SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI000233C40F	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:-:33419515..33425396

Molecular Weight (calculated)

87166.1 Da

IEP (calculated)

7.843

GRAVY (calculated)

-0.591

Length

794 amino acids

Sequence
(BLAST)

001: MSNLRPESHV AQQIRREKLR IQNSSQPSHE FPNNLEQLSL HPAGGFNNLD LLQVRSVRNA NILDGLAVYS SEMPNFSTSS SNPNLSDARN ALEYHQEQGA
101: AAEPSNRLMM NQYGSFPHSM SAIHSSHKEH CELRNLGNWR NSAPHQGSDW FVNYASNANS FLSADLNNNV SAYNELMDVH CSNASGEISG REIQKQLGVL
201: HNNPPPSPLY QNALQDIVKS ASFSSHTRQD MSSLMQQNDH SIWVGNAGEA EPQQPSYENQ PNQLHFGWTN RTIANTLSDS TPQSLSLSLS SNAQPKPSVS
301: HLEQGSASDD PQCLTNMKSI VKPSIVSRDI GKSVQETVGM PSKSTITYRS VGPLGPFTGY ATILKSSRFL KSAQQLLDEI CCLSGAKFAK SYDVSKRVSP
401: EVSASTSADT VTGVAAKGSN SGSSSSILYS VSKENRADPG VRSSFGLSSR PDYQHKKAKL LYMQEEVTRQ CKQYHLQMQM VVSSFESVAG LGSATPYIPM
501: ALKSVSKHFR CFKNSISEQL KLISEALGED LSKPSNTSTC SNKADTTTTK ARIRCSIDQS FLKNKSVKGT TELLEQHVWR PQRGLPERAV AILKAWLFEH
601: FLHPYPTDTD KHMLASQTGL SRNQVSNWFI NARVRVWKPM VEEIHTLETK ATSSKGNCGK NEGTSSGTEG DTSNPRALSN IGMNSIPENQ FQGMDMGSSI
701: IAANAEESGL NSEQWSQEKR SKLECQMTTS NMDGTLMGFV PYRRGGGIEV GGLGSVSLTL GLRHGVEGVQ HQQQLQEEQL RHHLGGHMIH DFVG

Best Arabidopsis Sequence Match ( AT2G27990.1 )
(BLAST)

001: MDMIKPDFQQ IRRDKFRVEQ MNDFPNTWTQ QQHQNIRIPN NLDLIGILQN QISVPVQTDL YQDSAATFMN MPQSIHRDPQ GPSNWRISDL SQPSTVNHGY
101: DQAGIRPNNV ADLLSDHFSS RNQILDRPLY VGRDSIPQSS MIRRSEVSCL DDNQKGCVTV ACSGTGNEIL RSSYDQGSSS GSYRGEFSFL PSLENQSVAH
201: NASNWNHGPV NVTATSHTNS KKGFPLSLLS DIPPSRDVGN AAVLSTMNIH GPLGPFTGYA SILKSSRFLE PAQKMLEEFC ISYASKIISR SESTSMEDDD
301: DDDDNLSGFS SSSEPLEPKN RLKKAKLLFL QEEVCKWYKL YNHQLQTVMS SFNTVAGLNT ATPYISLALK RTSRSFKALR TAIAEHVKQI SSHSSNGNNN
401: NRFQKRQRSL IGNNVGFESQ QQHIWRPQRG LPERAVAVLR AWLFDHFLHP YPTDSDKQML ATQTGLSRNQ VSNWFINARV RLWKPMVEEI HTLETKAIKN
501: ADTSHNIEPS NRPNTVSSPS HEQTLTGLSG TKRSRLEYMD MVGFNRGNVS LTLELRRGVD NVIQTQTQDH QFGTGSQMFH DFVG

Arabidopsis Description

BLH8BEL1-like homeodomain protein 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.