CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 4

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH69971	Soybean	nucleus	81.21	93.62
KRH28575	Soybean	nucleus	63.45	69.93
KRH76894	Soybean	nucleus	63.45	69.44
Bra032147.1-P	Field mustard	nucleus	26.38	64.06
GSMUA_Achr5P08840_001	Banana	nucleus	25.61	62.78
VIT_04s0023g01020.t01	Wine grape	nucleus	67.44	61.94
GSMUA_Achr4P14670_001	Banana	nucleus	23.29	60.94
Solyc02g089940.2.1	Tomato	nucleus	56.37	60.33
GSMUA_Achr4P07450_001	Banana	nucleus	23.42	60.07
PGSC0003DMT400026172	Potato	nucleus	55.98	58.94
GSMUA_Achr1P26900_001	Banana	nucleus	29.6	57.79
CDX76849	Canola	nucleus	42.86	55.41
CDY46061	Canola	nucleus	42.86	54.77
Bra039212.1-P	Field mustard	nucleus	42.73	54.61
GSMUA_Achr7P27440_001	Banana	nucleus	46.85	53.22
CDY39669	Canola	nucleus	44.02	53.02
CDY62523	Canola	nucleus	44.02	52.78
AT2G23760.4	Thale cress	nucleus	44.66	51.1
EER93512	Sorghum	nucleus, plastid	47.1	47.53
Zm00001d033898_P002	Maize	nucleus	45.95	47.28
TraesCS4B01G063100.1	Wheat	nucleus, plastid	44.66	46.83
TraesCS4A01G252100.2	Wheat	nucleus	45.05	45.4
Os03t0732100-01	Rice	nucleus	45.95	45.19
TraesCS4D01G062100.1	Wheat	nucleus	45.43	43.96
HORVU4Hr1G010430.6	Barley	nucleus	44.92	43.14
KRH27902	Soybean	nucleus	27.93	33.8
KRH77572	Soybean	nucleus	28.06	33.75
KRH59951	Soybean	nucleus	27.28	33.39
KRH41225	Soybean	nucleus	27.54	33.13
KRH26689	Soybean	nucleus	22.01	33.08
KRH61118	Soybean	nucleus	18.4	32.5
KRH51793	Soybean	nucleus	18.15	31.54
KRH00065	Soybean	nucleus	22.65	30.72
KRH75724	Soybean	nucleus	23.81	30.38
KRH65931	Soybean	nucleus	24.07	30.31
KRH32854	Soybean	nucleus	25.74	30.26
KRH72182	Soybean	nucleus	25.61	29.97
KRH51485	Soybean	nucleus	21.24	29.68
KRH22635	Soybean	nucleus	26.38	29.2
KRG96259	Soybean	nucleus	24.71	28.24
KRH68008	Soybean	nucleus	24.58	28.13
KRH05875	Soybean	nucleus	21.88	27.82
KRH15136	Soybean	nucleus	22.27	27.2
KRH61114	Soybean	nucleus	22.14	26.63
KRH60794	Soybean	nucleus	22.65	26.59
KRH25319	Soybean	nucleus	25.35	26.59
KRH51792	Soybean	nucleus	21.75	26.53
KRG88864	Soybean	nucleus	25.35	25.79
KRH30618	Soybean	nucleus	24.97	25.26
KRH25064	Soybean	nucleus	24.32	24.87
KRH22860	Soybean	nucleus	24.45	24.17
KRH26495	Soybean	nucleus	24.2	23.68
KRH52190	Soybean	nucleus	15.06	21.31
KRH61499	Soybean	nucleus	14.29	19.3
KRH05496	Soybean	nucleus	14.03	19.09

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100814959	MapMan:15.5.3.5	EMBL:ACUP02010161	EnsemblPlantsGene:GLYMA_16G142800	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:K7MHC0
ProteinID:KRH08328.1	EnsemblPlants:KRH08329	ProteinID:KRH08329	ProteinID:KRH08329.1	PFAM:PF05920	PFAM:PF07526
InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF136	SMART:SM00389	SMART:SM00574
SUPFAM:SSF46689	UniParc:UPI000295952C	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:30201467..30210093

Molecular Weight (calculated)

84669.8 Da

IEP (calculated)

7.500

GRAVY (calculated)

-0.692

Length

777 amino acids

Sequence
(BLAST)

001: MGIATPSSSL PSILSHSKTH QQQIHHSNSM SQDYHHHHHQ GIFSFPNGFE RSAATTMTHQ DPHHHHHHHH QQQQIRRDKV RVQGFEPPPQ QTLLPIEEDE
101: SGSLPVYETA GMLSEMFNFP PGAAELLEQQ QQQQQQQPMA MTTTFRASPS ARAVGSGGSE WYGNRQGMLS GLGPLGDSKN HHHHHGSVNS RDSSSSSIVQ
201: NQHHHHHNHQ HHQMSSINAD SAAAMQLFLM NPQTTRSPSP PPPPPPPPSS TLHMLLPTFP PGSGGSFSQF TWLPDTTQEG GGPSTEGPGH GQGLSLSLSS
301: SLEAAKAEEL RMGNSGFLYY NQASGGPSSY KSTLGGHHHQ ALLAQTHQGH VGFGAASSST SSLGVVNALR NSKYAKAAQE LLEEFCSVGR GQFKKNKFNR
401: QLSNPSSNLR GSGGGASSSS SKDVPPLSAA DRIEHQRRKV KLLTMLDEVD RRYSHYCEQM HMVVNAFDMV MGFGAAVPYT ALAQKAMSRH FRCLKDAITA
501: QLKHSCEVLG EKDGAGNSGL TKGETPRLKM LEQSLRQQRA FHQMGMMEQE AWRPQRGLPE RSVNILRAWL FEHFLHPYPS DADKHLLARQ TGLSRNQVSN
601: WFINARVRLW KPMVEDMYQQ ELKEAEGAEE EREGNQSSSN NSGHQLAQTP TPSTTASTAT APPPPTTTPP TGKRSDSESD PSLAPINNTT STAAMTVTAS
701: EVTQLSELPR TMVADESCRH GSLVATEFGT ASAASEIGST LIRFGTTAGD VSLTLGLRHA GNMPEKTPFS VRDFGGI

Best Arabidopsis Sequence Match ( AT4G36870.1 )
(BLAST)

001: MGITKTSPNT TILLKTFHNN SMSQDYHHHH HHNQHQGGIF NFSNGFDRSD SPNLTTQQKQ EHQRVEMDEE SSVAGGRIPV YESAGMLSEM FNFPGSSGGG
101: RDLDLGQSFR SNRQLLEEQH QNIPAMNATD SATATAAAMQ LFLMNPPPPQ QPPSPSSTTS PRSHHNSSTL HMLLPSPSTN TTHHQNYTNH MSMHQLPHQH
201: HQQISTWQSS PDHHHHHHNS QTEIGTVHVE NSGGHGGQGL SLSLSSSLEA AAKAEEYRNI YYGANSSNAS PHHQYNQFKT LLANSSQHHH QVLNQFRSSP
301: AASSSSMAAV NILRNSRYTT AAQELLEEFC SVGRGFLKKN KLGNSSNPNT CGGDGGGSSP SSAGANKEHP PLSASDRIEH QRRKVKLLTM LEEVDRRYNH
401: YCEQMQMVVN SFDIVMGHGA ALPYTALAQK AMSRHFRCLK DAVAAQLKQS CELLGDKDAA GISSSGLTKG ETPRLRLLEQ SLRQNRAFHQ MGMMEQEAWR
501: PQRGLPERSV NILRAWLFEH FLHPYPSDAD KHLLARQTGL SRNQVSNWFI NARVRLWKPM VEEMYQQESK EREREEELEE NEEDQETKNS NDDKSTKSNN
601: NESNFTAVRT TSQTPTTTAP DASDADAAVA TGHRLRSNIN AYENDASSLL LPSSYSNAAA PAAVSDDLNS RYGGSDAFSA VATCQQSVGG FDDADMDGVN
701: VIRFGTNPTG DVSLTLGLRH AGNMPDKDAS FCVREFGGF

Arabidopsis Description

BLH2BEL1-like homeodomain protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.