CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68008	Soybean	nucleus	95.0	95.14
KRH32854	Soybean	nucleus	74.56	76.7
KRH72182	Soybean	nucleus	74.56	76.36
VIT_08s0105g00230.t01	Wine grape	nucleus	57.79	62.98
KRH26689	Soybean	nucleus	44.26	58.22
PGSC0003DMT400054945	Potato	nucleus	57.94	55.97
Solyc01g007070.2.1	Tomato	nucleus	57.35	55.71
CDY32069	Canola	nucleus	50.74	54.25
CDY40420	Canola	nucleus	49.85	53.64
Bra017277.1-P	Field mustard	nucleus	53.09	53.48
CDX84585	Canola	nucleus	52.65	53.35
AT2G35940.3	Thale cress	nucleus	53.24	53.24
KRH22635	Soybean	nucleus	53.82	52.14
CDX84171	Canola	nucleus	45.0	52.04
CDX79646	Canola	nucleus	52.65	51.81
CDX75085	Canola	nucleus	47.5	51.43
Bra005310.1-P	Field mustard	nucleus	47.35	51.27
Bra023045.1-P	Field mustard	nucleus	47.94	49.92
Os11t0158600-00	Rice	nucleus	29.26	47.38
KRH25319	Soybean	nucleus	50.44	46.29
KRG88864	Soybean	nucleus	51.03	45.42
TraesCS4A01G200800.1	Wheat	nucleus	41.76	42.77
TraesCS4B01G114600.1	Wheat	nucleus	41.47	42.6
Zm00001d053151_P003	Maize	nucleus	41.91	42.47
TraesCS4D01G111900.1	Wheat	nucleus	41.47	42.47
EES09309	Sorghum	nucleus	41.91	41.3
HORVU4Hr1G020710.1	Barley	nucleus	31.47	41.15
GSMUA_Achr2P06410_001	Banana	nucleus	8.24	38.62
Os11t0158832-00	Rice	nucleus	14.26	36.88
KRH61118	Soybean	nucleus	23.53	36.36
KRH51793	Soybean	nucleus	23.38	35.57
KRH51485	Soybean	nucleus	27.65	33.81
KRH60794	Soybean	nucleus	32.06	32.93
KRH05875	Soybean	nucleus	28.68	31.91
KRH51792	Soybean	nucleus	29.56	31.55
KRH15136	Soybean	nucleus	29.41	31.45
KRH61114	Soybean	nucleus	29.71	31.27
KRH27902	Soybean	nucleus	28.24	29.91
KRH77572	Soybean	nucleus	28.38	29.88
KRH00065	Soybean	nucleus	24.41	28.97
KRH41225	Soybean	nucleus	27.21	28.64
KRH59951	Soybean	nucleus	26.32	28.19
KRH75724	Soybean	nucleus	24.26	27.09
KRH28575	Soybean	nucleus	27.94	26.95
KRH65931	Soybean	nucleus	24.26	26.74
KRH76894	Soybean	nucleus	27.65	26.48
KRH69971	Soybean	nucleus	25.15	25.37
KRH08329	Soybean	nucleus	28.24	24.71
KRH52190	Soybean	nucleus	19.26	23.86
KRH25064	Soybean	nucleus	25.59	22.89
KRH30618	Soybean	nucleus	25.29	22.4
KRH61499	Soybean	nucleus	18.82	22.26
KRH05496	Soybean	nucleus	18.24	21.72
KRH26495	Soybean	nucleus	24.71	21.16
KRH22860	Soybean	nucleus	23.97	20.74

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:100810901	MapMan:15.5.3.5	EMBL:ACUP02012150	ncoils:Coil	EnsemblPlantsGene:GLYMA_19G199500
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	UniProt:I1NAU4
InterPro:IPR001356	EnsemblPlants:KRG96259	ProteinID:KRG96259	ProteinID:KRG96259.1	PFAM:PF05920	PFAM:PF07526
InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF135	SMART:SM00389	SMART:SM00574
SUPFAM:SSF46689	UniParc:UPI000233DECC	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:45654324..45659452

Molecular Weight (calculated)

74137.5 Da

IEP (calculated)

7.185

GRAVY (calculated)

-0.673

Length

680 amino acids

Sequence
(BLAST)

001: MATYFHHGNS EIQSGGADGL QTLVLMNPGY IHYSDAPQQQ QQQSSLAAGN LVFLNPAAVA GGNNNSFNPH APPSHTQQFV GVPLPNSQDL NHHSMHAHHD
101: VSALHGFLPR MQYNPWNAFD PTSAARETPR AQQGLSLGLG SFREGQAPAM SGDDLRVSGG SPSSASGVTN NGASGIHSVP LSSKYLKAAH ELLEEVANVN
201: NGIGTELRKK SGGQTRVIGE SSAAGSGDGS VGGEGNGKRS SELSTAERQE IQMKKAKLIG MLDEVEQRYR QYQQQMEIVV SSFEQAAGIG SARTYTALAL
301: QTISKQFRCL KDAIAGQVRT ANKSLGEEDC FGGKMEGSRL KYVDHHLRQQ RALQQLGMIQ HNAWRPQRGL PERSVSVLRA WLFEHFLHPY PKDSDKHMLA
401: KQTGLTRSQV SNWFINARVR LWKPMVEEMY MEEMKDHEQN GSEDKSSKSN EDSSSKMSAP QDKGPSNETE AKSFNSKQEV SKSQNTAMVS VSRPSTSPLG
501: VNVRNQSGFS FMGSSELDGI TQGSPKKPRN HEMMHSPNSV PSLNMDVKPN DENSEQLSMR FGVERQGRNE SSFMGNQTNF IGGFGQYPIG DIGRFDAEQF
601: TPRFSGNGVS LTLGLDSLPG THQTFLPNQN IQLGRSLDIG EPNEFGAIST SSPHSTAAYE SISMQNPKRF AAQLLPDFVT

Best Arabidopsis Sequence Match ( AT2G16400.1 )
(BLAST)

001: MATYYKTGSS EIYSRPEFVP GNAMNYTNSF TETFPRDSTN NVSPSKEIQV LSSLGGVSQM VEIQDSGSWR DQEDNDRNRF PVMRRLGLSS QIETSRGNNN
101: NEYATQVVSG FTRTIHNSKY LKAAQELLDE TVNVKKALKQ FQPEGDKINE VKEKNLQTNT AEIPQAERQE LQSKLSKLLS ILDEVDRNYK QYYHQMQIVV
201: SSFDVIAGCG AAKPYTALAL QTISRHFRCL RDAISGQILV IRKSLGGEQD GSDGRGVGIS RLRNVDQQVR QQRALQRLGV MQPHTWRPQR GLPDSSVLVL
301: RAWLFEHFLH PYPKDSDKIM LARQTGLSRG QVSNWFINAR VRLWKPMVEE MYKEEFTDAL QENDPNQSSE NTPEITEIQE LQTESSSNNG HVPGVASSSM
401: RQNTVAHGGD RFMMVTDMTR NGNGGMSLTL GIQNSDARGD VPMSGGIDNY KNTISGTDLQ YLNSRNHQHQ IGSSQLLHDF VA

Arabidopsis Description

BLH7BEL1-like homeodomain protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIW1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.