Factsheet for TraesCS4D01G111900.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G200800.1	Wheat	nucleus	98.64	98.64
TraesCS4B01G114600.1	Wheat	nucleus	97.44	97.73
HORVU4Hr1G020710.1	Barley	nucleus	64.91	82.88
Os11t0158600-00	Rice	nucleus	45.93	72.62
Zm00001d053151_P003	Maize	nucleus	71.84	71.09
Os11t0158832-00	Rice	nucleus	28.01	70.72
EES09309	Sorghum	nucleus	72.59	69.86
GSMUA_Achr10P...	Banana	nucleus	32.38	51.44
GSMUA_Achr6P07130_001	Banana	nucleus	37.05	50.1
KRH26689	Soybean	nucleus	35.54	45.65
GSMUA_Achr6P18180_001	Banana	nucleus	41.27	43.22
KRH32854	Soybean	nucleus	42.92	43.12
KRH72182	Soybean	nucleus	43.07	43.07
CDY32069	Canola	nucleus	40.36	42.14
KRH68008	Soybean	nucleus	42.77	41.83
CDY40420	Canola	nucleus	39.61	41.61
KRG96259	Soybean	nucleus	42.47	41.47
VIT_06s0009g00410.t01	Wine grape	nucleus	44.73	40.8
CDX84171	Canola	nucleus	35.99	40.65
KRH22635	Soybean	nucleus	42.92	40.6
Bra017277.1-P	Field mustard	nucleus	40.96	40.3
CDX84585	Canola	nucleus	40.66	40.24
AT2G35940.3	Thale cress	nucleus	40.66	39.71
Bra005310.1-P	Field mustard	nucleus	37.5	39.65
CDX75085	Canola	nucleus	37.5	39.65
PGSC0003DMT400015183	Potato	nucleus	40.66	39.47
VIT_08s0105g00230.t01	Wine grape	nucleus	36.9	39.26
CDX79646	Canola	nucleus	40.81	39.22
Solyc01g007070.2.1	Tomato	nucleus	40.66	38.57
Solyc06g074120.2.1	Tomato	nucleus	40.51	38.48
PGSC0003DMT400054945	Potato	nucleus	40.36	38.07
KRH25319	Soybean	nucleus	42.02	37.65
KRG88864	Soybean	nucleus	42.62	37.04
PGSC0003DMT400050527	Potato	nucleus	39.31	36.97
Bra023045.1-P	Field mustard	nucleus	36.3	36.91
TraesCS4D01G279300.1	Wheat	nucleus	32.53	36.8
Solyc11g068950.1.1	Tomato	nucleus	35.84	36.01
TraesCS4D01G022600.1	Wheat	nucleus	31.48	32.76
TraesCS5D01G013300.1	Wheat	nucleus	31.93	32.62
CDY30566	Canola	nucleus	21.99	32.59
Bra034335.1-P	Field mustard	nucleus	21.99	32.59
TraesCS4D01G022500.1	Wheat	nucleus	18.07	32.17
CDX77099	Canola	nucleus	21.69	32.07
AT2G27220.2	Thale cress	nucleus	21.54	31.85
TraesCS7D01G019800.1	Wheat	nucleus	22.59	31.06
TraesCS1D01G193800.1	Wheat	nucleus	25.6	28.86
TraesCS4D01G340700.1	Wheat	nucleus	25.15	27.24
TraesCS1D01G280300.1	Wheat	nucleus	23.19	26.88
TraesCS3D01G357400.1	Wheat	nucleus	23.64	25.2
TraesCS4D01G062100.1	Wheat	nucleus	27.86	23.04
TraesCS7D01G364500.1	Wheat	nucleus	15.81	19.09

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	PFAM:PF05920
PFAM:PF07526	InterPro:POX_dom	PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF194	SMART:SM00389
SMART:SM00574	SUPFAM:SSF46689	EnsemblPlantsGene:TraesCS4D01G111900	EnsemblPlants:TraesCS4D01G111900.1	TIGR:cd00086	SEG:seg

Description

No Description!

Coordinates

chr4D:+:93067569..93071438

Molecular Weight (calculated)

69352.8 Da

IEP (calculated)

6.405

GRAVY (calculated)

-0.467

Length

664 amino acids

Sequence
(BLAST)

001: MAAYYHGGAG TDIHQAGSDG LQTLYLMNPS YGNGSYGDAG PSGANMMLLN SAVSSMTPAS FGGHQASPPP GQHFVGIPLQ APPSGYNLWT PATTGIADVM
101: SPPTQQAHGV SAVLSLSSRE TPPVTVASIA GDEGRYHLGA TTAASQGQVV MNSKYLRAAQ ELLDEVVSVS KGVDDVDAKA KSAVSVKKKE DSEGLSGGGG
201: EEGASGAKGG APAPEMSTAE RQELQMKKGK LVNMLDEVEQ RYRQYHQQMA SVSSSFEAVA GAGSARTYTA LALRTISRQF RCLRDAIASQ VRAASRALGE
301: DCDAEGLGGG LGGGRGVGSR LRYIDHQLRQ QRALQQLGMM QSSAWRPQRG LPERSVSILR AWLFEHFLHP YPKDSDKIML AKQTGLTRSQ VSNWFINARV
401: RLWKPMVEEM YLEETKEHQQ QQDGGDDKGR PTGSGPAGGK SSSNADGVDD GTPRSMARAA VGAGTSEGGG AVQASLLELA GDHQAHAGFY DEEGEDGGLR
501: RGFKKARAAD LEQQPPAAFD FGALHHAQAA AAAAAAAARQ QHDEVTHREL LMKFMESGGA AGARDHHHHQ QDEDGAGGGY SLFAPGPYGQ FGTDQSFAFA
601: GAGQHGGVSL TLGLPHGAGD QTAFLMGGGS SNGADSGGSG AAGYDMNMQT TKSFAAQLMR DFVA

Best Arabidopsis Sequence Match ( AT2G35940.3 )
(BLAST)

001: MAAYFHGNPP EISAGSDGGL QTLILMNPTT YVQYTQQDND SNNNNNSNNS NNNNTNTNTN NNNSSFVFLD SHAPQPNASQ QFVGIPLSGH EAASITAADN
101: ISVLHGYPPR VQYSLYGSHQ VDPTHQQAAC ETPRAQQGLS LTLSSQQQQQ QQHHQQHQPI HVGFGSGHGE DIRVGSGSTG SGVTNGIANL VSSKYLKAAQ
201: ELLDEVVNAD SDDMNAKSQL FSSKKGSCGN DKPVGESSAG AGGEGSGGGA EAAGKRPVEL GTAERQEIQM KKAKLSNMLH EVEQRYRQYH QQMQMVISSF
301: EQAAGIGSAK SYTSLALKTI SRQFRCLKEA IAGQIKAANK SLGEEDSVSG VGRFEGSRLK FVDHHLRQQR ALQQLGMIQH PSNNAWRPQR GLPERAVSVL
401: RAWLFEHFLH PYPKDSDKHM LAKQTGLTRS QVSNWFINAR VRLWKPMVEE MYMEEMKEQA KNMGSMEKTP LDQSNEDSAS KSTSNQEKSP MADTNYHMNP
501: NHNGDLEGVT GMQGSPKRLR TSDETMMQPI NADFSSNEKL TMKILEERQG IRSDGGYPFM GNFGQYQMDE MSRFDVVSDQ ELMAQRYSGN NNGVSLTLGL
601: PHCDSLSSTH HQGFMQTHHG IPIGRRVKIG ETEEYGPATI NGGSSTTTAH SSAAAAAAYN GMNIQNQKRY VAQLLPDFVA

Arabidopsis Description

BLH1BEL1-like homeodomain protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ56]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.