Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers |
---|---|---|---|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400050527 | Potato | nucleus | 91.68 | 85.84 |
KRH26689 | Soybean | nucleus | 40.7 | 52.03 |
Solyc06g074120.2.1 | Tomato | nucleus | 52.04 | 49.21 |
VIT_06s0009g00410.t01 | Wine grape | nucleus | 49.47 | 44.92 |
KRH22635 | Soybean | nucleus | 46.9 | 44.16 |
Os11t0158600-00 | Rice | nucleus | 26.78 | 42.14 |
Solyc10g086640.1.1 | Tomato | nucleus | 16.34 | 41.86 |
Solyc01g007070.2.1 | Tomato | nucleus | 43.27 | 40.86 |
KRH25319 | Soybean | nucleus | 45.69 | 40.76 |
KRG88864 | Soybean | nucleus | 46.14 | 39.92 |
Zm00001d053151_P003 | Maize | nucleus | 36.91 | 36.36 |
TraesCS4B01G114600.1 | Wheat | nucleus | 36.01 | 35.95 |
TraesCS4D01G111900.1 | Wheat | nucleus | 36.01 | 35.84 |
TraesCS4A01G200800.1 | Wheat | nucleus | 36.01 | 35.84 |
HORVU4Hr1G020710.1 | Barley | nucleus | 28.14 | 35.77 |
EES09309 | Sorghum | nucleus | 36.91 | 35.36 |
AT2G27220.2 | Thale cress | nucleus | 22.84 | 33.63 |
Bra034335.1-P | Field mustard | nucleus | 22.54 | 33.26 |
CDY30566 | Canola | nucleus | 22.54 | 33.26 |
CDX77099 | Canola | nucleus | 22.54 | 33.18 |
Solyc04g080780.2.1 | Tomato | nucleus | 18.76 | 31.0 |
Solyc04g080790.2.1 | Tomato | nucleus | 30.41 | 30.41 |
Solyc01g109980.2.1 | Tomato | nucleus | 29.35 | 30.08 |
Solyc09g011380.2.1 | Tomato | nucleus | 22.54 | 29.56 |
Os11t0158832-00 | Rice | nucleus | 10.59 | 26.62 |
Solyc08g081400.2.1 | Tomato | nucleus | 24.66 | 25.31 |
Solyc02g065490.2.1 | Tomato | nucleus | 23.75 | 25.16 |
Solyc11g069890.1.1 | Tomato | golgi | 21.94 | 25.0 |
Solyc02g089940.2.1 | Tomato | nucleus | 26.63 | 24.24 |
Solyc04g079830.2.1 | Tomato | nucleus | 24.96 | 23.84 |
Solyc08g065420.2.1 | Tomato | nucleus | 16.79 | 19.86 |
Protein Annotations
Gene3D:1.10.10.60 | MapMan:15.5.3.5 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:Homeobox-like_sf |
InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom | InterPro:IPR001356 | UniProt:K4DA52 | PFAM:PF05920 | PFAM:PF07526 |
InterPro:POX_dom | PFscan:PS50071 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF135 | SMART:SM00389 | SMART:SM00574 |
SUPFAM:SSF46689 | EnsemblPlantsGene:Solyc11g068950.1 | EnsemblPlants:Solyc11g068950.1.1 | UniParc:UPI000276A79C | SEG:seg | : |
Description
No Description!
Coordinates
chr11:-:53499605..53504338
Molecular Weight (calculated)
72931.6 Da
IEP (calculated)
7.371
GRAVY (calculated)
-0.657
Length
661 amino acids
Sequence
(BLAST)
(BLAST)
001: MFLLNSVASG NFPHVSLPLQ AHAQGHLVGV PLPGDFQDSN RPSIQEISAS HHGLLSRLWT SGDQSTPRGG GGGGEGNGSK SHIPSSTVVS PNSGSVGGTT
101: TDFASQLGFQ RPGLVSPTQA HHQGLSLSLS PQQQMNFGSS LPLDHREIST TNHQVGILSS SPGVNTSNID HTRGSGALSS FSISNGMILG SKYLKVAQDL
201: LDEVVSVGKN IKLSEVGGAK EKHKLENELI SLASDDIESN TQKNSGVELT TAQRQELQMK KAKLVSMLDE VDQRYRQYHH QMQMIATSFE QTTGIGSSKS
301: YTQLALHTIS KQFRCLKDAI SGQIKDTNKT LGEEENIGGK IEGSKLKFVD HHLRQQRALQ QLGMMQTNAW RPQRGLPERA VSVLRAWLFE HFLHPYPKDS
401: DKIMLAKQTG LTRSQVSNWF INARVRLWKP MVEEMYMEEV KKNNQEQNGL DQKIIEPNNN EIVGSKSSAP QEKLPISSNI IHDATSNDIS TSTISTSPTG
501: GGGSMPAQTV GGFSLIRSLN MDNIDDQRNN KKARNEMQSS TIISMEREIM NKVKSEKFNN TQTRECYTLM TPSYTMDDDQ QFGTRFNNQN HEQLATTFHQ
601: GSNGHVSLTL GLPPNSENQH NYIGLESHYN QPTHHPNISY ENIDFQSGKR YATQLLQDYV S
101: TDFASQLGFQ RPGLVSPTQA HHQGLSLSLS PQQQMNFGSS LPLDHREIST TNHQVGILSS SPGVNTSNID HTRGSGALSS FSISNGMILG SKYLKVAQDL
201: LDEVVSVGKN IKLSEVGGAK EKHKLENELI SLASDDIESN TQKNSGVELT TAQRQELQMK KAKLVSMLDE VDQRYRQYHH QMQMIATSFE QTTGIGSSKS
301: YTQLALHTIS KQFRCLKDAI SGQIKDTNKT LGEEENIGGK IEGSKLKFVD HHLRQQRALQ QLGMMQTNAW RPQRGLPERA VSVLRAWLFE HFLHPYPKDS
401: DKIMLAKQTG LTRSQVSNWF INARVRLWKP MVEEMYMEEV KKNNQEQNGL DQKIIEPNNN EIVGSKSSAP QEKLPISSNI IHDATSNDIS TSTISTSPTG
501: GGGSMPAQTV GGFSLIRSLN MDNIDDQRNN KKARNEMQSS TIISMEREIM NKVKSEKFNN TQTRECYTLM TPSYTMDDDQ QFGTRFNNQN HEQLATTFHQ
601: GSNGHVSLTL GLPPNSENQH NYIGLESHYN QPTHHPNISY ENIDFQSGKR YATQLLQDYV S
001: MAAYFHGNPP EISAGSDGGL QTLILMNPTT YVQYTQQDND SNNNNNSNNS NNNNTNTNTN NNNSSFVFLD SHAPQPNASQ QFVGIPLSGH EAASITAADN
101: ISVLHGYPPR VQYSLYGSHQ VDPTHQQAAC ETPRAQQGLS LTLSSQQQQQ QQHHQQHQPI HVGFGSGHGE DIRVGSGSTG SGVTNGIANL VSSKYLKAAQ
201: ELLDEVVNAD SDDMNAKSQL FSSKKGSCGN DKPVGESSAG AGGEGSGGGA EAAGKRPVEL GTAERQEIQM KKAKLSNMLH EVEQRYRQYH QQMQMVISSF
301: EQAAGIGSAK SYTSLALKTI SRQFRCLKEA IAGQIKAANK SLGEEDSVSG VGRFEGSRLK FVDHHLRQQR ALQQLGMIQH PSNNAWRPQR GLPERAVSVL
401: RAWLFEHFLH PYPKDSDKHM LAKQTGLTRS QVSNWFINAR VRLWKPMVEE MYMEEMKEQA KNMGSMEKTP LDQSNEDSAS KSTSNQEKSP MADTNYHMNP
501: NHNGDLEGVT GMQGSPKRLR TSDETMMQPI NADFSSNEKL TMKILEERQG IRSDGGYPFM GNFGQYQMDE MSRFDVVSDQ ELMAQRYSGN NNGVSLTLGL
601: PHCDSLSSTH HQGFMQTHHG IPIGRRVKIG ETEEYGPATI NGGSSTTTAH SSAAAAAAYN GMNIQNQKRY VAQLLPDFVA
101: ISVLHGYPPR VQYSLYGSHQ VDPTHQQAAC ETPRAQQGLS LTLSSQQQQQ QQHHQQHQPI HVGFGSGHGE DIRVGSGSTG SGVTNGIANL VSSKYLKAAQ
201: ELLDEVVNAD SDDMNAKSQL FSSKKGSCGN DKPVGESSAG AGGEGSGGGA EAAGKRPVEL GTAERQEIQM KKAKLSNMLH EVEQRYRQYH QQMQMVISSF
301: EQAAGIGSAK SYTSLALKTI SRQFRCLKEA IAGQIKAANK SLGEEDSVSG VGRFEGSRLK FVDHHLRQQR ALQQLGMIQH PSNNAWRPQR GLPERAVSVL
401: RAWLFEHFLH PYPKDSDKHM LAKQTGLTRS QVSNWFINAR VRLWKPMVEE MYMEEMKEQA KNMGSMEKTP LDQSNEDSAS KSTSNQEKSP MADTNYHMNP
501: NHNGDLEGVT GMQGSPKRLR TSDETMMQPI NADFSSNEKL TMKILEERQG IRSDGGYPFM GNFGQYQMDE MSRFDVVSDQ ELMAQRYSGN NNGVSLTLGL
601: PHCDSLSSTH HQGFMQTHHG IPIGRRVKIG ETEEYGPATI NGGSSTTTAH SSAAAAAAYN GMNIQNQKRY VAQLLPDFVA
Arabidopsis Description
BLH1BEL1-like homeodomain protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ56]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.