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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • plastid 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:mitochondrion, nucleus, plastid
BaCelLo:nucleus
EpiLoc:nucleus
iPSORT:plastid
MultiLoc:nucleus
Plant-mPloc:nucleus
Predotar:plastid
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:nucleus
YLoc:nucleus
nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400050527 Potato nucleus 91.68 85.84
KRH26689 Soybean nucleus 40.7 52.03
Solyc06g074120.2.1 Tomato nucleus 52.04 49.21
VIT_06s0009g00410.t01 Wine grape nucleus 49.47 44.92
KRH22635 Soybean nucleus 46.9 44.16
Os11t0158600-00 Rice nucleus 26.78 42.14
Solyc10g086640.1.1 Tomato nucleus 16.34 41.86
Solyc01g007070.2.1 Tomato nucleus 43.27 40.86
KRH25319 Soybean nucleus 45.69 40.76
KRG88864 Soybean nucleus 46.14 39.92
Zm00001d053151_P003 Maize nucleus 36.91 36.36
TraesCS4B01G114600.1 Wheat nucleus 36.01 35.95
TraesCS4D01G111900.1 Wheat nucleus 36.01 35.84
TraesCS4A01G200800.1 Wheat nucleus 36.01 35.84
HORVU4Hr1G020710.1 Barley nucleus 28.14 35.77
EES09309 Sorghum nucleus 36.91 35.36
AT2G27220.2 Thale cress nucleus 22.84 33.63
Bra034335.1-P Field mustard nucleus 22.54 33.26
CDY30566 Canola nucleus 22.54 33.26
CDX77099 Canola nucleus 22.54 33.18
Solyc04g080780.2.1 Tomato nucleus 18.76 31.0
Solyc04g080790.2.1 Tomato nucleus 30.41 30.41
Solyc01g109980.2.1 Tomato nucleus 29.35 30.08
Solyc09g011380.2.1 Tomato nucleus 22.54 29.56
Os11t0158832-00 Rice nucleus 10.59 26.62
Solyc08g081400.2.1 Tomato nucleus 24.66 25.31
Solyc02g065490.2.1 Tomato nucleus 23.75 25.16
Solyc11g069890.1.1 Tomato golgi 21.94 25.0
Solyc02g089940.2.1 Tomato nucleus 26.63 24.24
Solyc04g079830.2.1 Tomato nucleus 24.96 23.84
Solyc08g065420.2.1 Tomato nucleus 16.79 19.86
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.5ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677
GO:GO:0005488GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634GO:GO:0006139
GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987InterPro:Homeobox-like_sf
InterPro:Homeobox_KN_domainInterPro:Homeobox_domInterPro:IPR001356UniProt:K4DA52PFAM:PF05920PFAM:PF07526
InterPro:POX_domPFscan:PS50071PANTHER:PTHR11850PANTHER:PTHR11850:SF135SMART:SM00389SMART:SM00574
SUPFAM:SSF46689EnsemblPlantsGene:Solyc11g068950.1EnsemblPlants:Solyc11g068950.1.1UniParc:UPI000276A79CSEG:seg:
Description
No Description!
Coordinates
chr11:-:53499605..53504338
Molecular Weight (calculated)
72931.6 Da
IEP (calculated)
7.371
GRAVY (calculated)
-0.657
Length
661 amino acids
Sequence
(BLAST)
001: MFLLNSVASG NFPHVSLPLQ AHAQGHLVGV PLPGDFQDSN RPSIQEISAS HHGLLSRLWT SGDQSTPRGG GGGGEGNGSK SHIPSSTVVS PNSGSVGGTT
101: TDFASQLGFQ RPGLVSPTQA HHQGLSLSLS PQQQMNFGSS LPLDHREIST TNHQVGILSS SPGVNTSNID HTRGSGALSS FSISNGMILG SKYLKVAQDL
201: LDEVVSVGKN IKLSEVGGAK EKHKLENELI SLASDDIESN TQKNSGVELT TAQRQELQMK KAKLVSMLDE VDQRYRQYHH QMQMIATSFE QTTGIGSSKS
301: YTQLALHTIS KQFRCLKDAI SGQIKDTNKT LGEEENIGGK IEGSKLKFVD HHLRQQRALQ QLGMMQTNAW RPQRGLPERA VSVLRAWLFE HFLHPYPKDS
401: DKIMLAKQTG LTRSQVSNWF INARVRLWKP MVEEMYMEEV KKNNQEQNGL DQKIIEPNNN EIVGSKSSAP QEKLPISSNI IHDATSNDIS TSTISTSPTG
501: GGGSMPAQTV GGFSLIRSLN MDNIDDQRNN KKARNEMQSS TIISMEREIM NKVKSEKFNN TQTRECYTLM TPSYTMDDDQ QFGTRFNNQN HEQLATTFHQ
601: GSNGHVSLTL GLPPNSENQH NYIGLESHYN QPTHHPNISY ENIDFQSGKR YATQLLQDYV S
Best Arabidopsis Sequence Match ( AT2G35940.3 )
(BLAST)
001: MAAYFHGNPP EISAGSDGGL QTLILMNPTT YVQYTQQDND SNNNNNSNNS NNNNTNTNTN NNNSSFVFLD SHAPQPNASQ QFVGIPLSGH EAASITAADN
101: ISVLHGYPPR VQYSLYGSHQ VDPTHQQAAC ETPRAQQGLS LTLSSQQQQQ QQHHQQHQPI HVGFGSGHGE DIRVGSGSTG SGVTNGIANL VSSKYLKAAQ
201: ELLDEVVNAD SDDMNAKSQL FSSKKGSCGN DKPVGESSAG AGGEGSGGGA EAAGKRPVEL GTAERQEIQM KKAKLSNMLH EVEQRYRQYH QQMQMVISSF
301: EQAAGIGSAK SYTSLALKTI SRQFRCLKEA IAGQIKAANK SLGEEDSVSG VGRFEGSRLK FVDHHLRQQR ALQQLGMIQH PSNNAWRPQR GLPERAVSVL
401: RAWLFEHFLH PYPKDSDKHM LAKQTGLTRS QVSNWFINAR VRLWKPMVEE MYMEEMKEQA KNMGSMEKTP LDQSNEDSAS KSTSNQEKSP MADTNYHMNP
501: NHNGDLEGVT GMQGSPKRLR TSDETMMQPI NADFSSNEKL TMKILEERQG IRSDGGYPFM GNFGQYQMDE MSRFDVVSDQ ELMAQRYSGN NNGVSLTLGL
601: PHCDSLSSTH HQGFMQTHHG IPIGRRVKIG ETEEYGPATI NGGSSTTTAH SSAAAAAAYN GMNIQNQKRY VAQLLPDFVA
Arabidopsis Description
BLH1BEL1-like homeodomain protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJ56]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.