Factsheet for Solyc10g086640.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g081120.2.1
Solyc04g077210.2.1
Solyc08g041820.2.1
Solyc09g011380.2.1
Solyc10g086640.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02030.1	Solyc02g081120.2.1	AT1G62360.1	12897247
AT5G02030.1	Solyc02g081120.2.1	AT1G62360.1	15019989
AT5G02030.1	Solyc02g081120.2.1	AT1G62360.1	15781858
AT5G02030.1	Solyc02g081120.2.1	AT1G62360.1	16513846
AT5G02030.1	Solyc04g077210.2.1	AT4G08150.1	12897247
AT5G02030.1	Solyc04g077210.2.1	AT4G08150.1	15019989
AT5G02030.1	Solyc04g077210.2.1	AT4G08150.1	15781858
AT5G02030.1	Solyc09g011380.2.1	AT5G02030.1	15781858
AT5G02030.1	Solyc10g086640.1.1	AT5G02030.1	15781858
AT5G02030.1	Solyc08g041820.2.1	AT5G25220.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G072010.1	Barley	mitochondrion	20.54	41.41
GSMUA_Achr10P...	Banana	nucleus	15.12	38.24
PGSC0003DMT400049235	Potato	nucleus	80.62	36.17
GSMUA_Achr10P...	Banana	plastid	12.02	31.96
Solyc09g011380.2.1	Tomato	nucleus	60.47	30.95
GSMUA_Achr7P14960_001	Banana	nucleus	50.0	29.32
AT5G02030.1	Thale cress	nucleus	56.59	25.39
Bra005703.1-P	Field mustard	nucleus	55.81	25.26
CDY69132	Canola	nucleus	55.81	25.09
CDY48107	Canola	nucleus	55.81	25.04
CDY40327	Canola	nucleus	55.81	24.91
Bra028883.1-P	Field mustard	nucleus	56.2	24.83
CDY10473	Canola	nucleus	55.04	24.7
VIT_08s0007g01290.t01	Wine grape	nucleus	61.24	24.61
Bra009618.1-P	Field mustard	nucleus	55.81	24.57
GSMUA_Achr5P07020_001	Banana	nucleus	49.61	24.38
KRH00065	Soybean	nucleus	52.71	23.73
KRH75724	Soybean	nucleus	54.26	22.99
EES18336	Sorghum	nucleus	50.39	22.81
Os05t0455200-01	Rice	nucleus	51.16	22.76
CDY55113	Canola	nucleus	46.12	22.75
TraesCS1D01G280300.1	Wheat	nucleus	50.39	22.69
KRH65931	Soybean	nucleus	53.88	22.53
TraesCS1A01G281100.1	Wheat	nucleus	50.0	22.47
TraesCS1B01G290200.1	Wheat	nucleus	50.39	22.41
CDX80798	Canola	nucleus	46.12	22.37
Zm00001d038355_P001	Maize	nucleus	49.61	22.22
Zm00001d010060_P001	Maize	nucleus	48.06	21.64
Solyc04g080780.2.1	Tomato	nucleus	33.33	21.5
Zm00001d042864_P002	Maize	nucleus	48.45	21.29
Os01t0848400-01	Rice	nucleus	50.39	21.24
EES03882	Sorghum	nucleus	47.67	20.74
TraesCS3B01G396100.1	Wheat	nucleus	48.45	20.16
TraesCS3D01G357400.1	Wheat	nucleus	48.45	20.06
TraesCS3A01G363900.1	Wheat	nucleus	48.06	19.75
Solyc11g069890.1.1	Tomato	golgi	43.41	19.31
Solyc08g081400.2.1	Tomato	nucleus	43.8	17.55
Solyc01g109980.2.1	Tomato	nucleus	43.41	17.36
Solyc02g065490.2.1	Tomato	nucleus	39.92	16.51
Solyc11g068950.1.1	Tomato	nucleus	41.86	16.34
HORVU1Hr1G072850.1	Barley	nucleus, plastid	50.0	16.25
Solyc06g074120.2.1	Tomato	nucleus	43.8	16.17
Solyc02g089940.2.1	Tomato	nucleus	45.35	16.12
Solyc04g079830.2.1	Tomato	nucleus	43.02	16.04
Solyc04g080790.2.1	Tomato	nucleus	41.09	16.04
Solyc01g007070.2.1	Tomato	nucleus	43.02	15.86
HORVU3Hr1G085720.1	Barley	nucleus, plastid	44.57	15.27
Solyc08g065420.2.1	Tomato	nucleus	27.91	12.88

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain
InterPro:Homeobox_dom	InterPro:IPR001356	UniProt:K4D495	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom
PFscan:PS50071	PANTHER:PTHR11850	PANTHER:PTHR11850:SF82	SMART:SM00389	SMART:SM00574	SUPFAM:SSF46689
EnsemblPlantsGene:Solyc10g086640.1	EnsemblPlants:Solyc10g086640.1.1	UniParc:UPI0002769622	SEG:seg	:	:

Description

No Description!

Coordinates

chr10:-:65415388..65418397

Molecular Weight (calculated)

29317.9 Da

IEP (calculated)

8.796

GRAVY (calculated)

-0.536

Length

258 amino acids

Sequence
(BLAST)

001: MSHNKAEEIS LELMQDISGI YAHKLLQDHH HSLGTMDEVS NHEHMRNNSK LISMLDEVHR RYKEYYEQLQ GVVSSFESVA GVGNASPFAN LSLKALSKHF
101: RCLIKAICDQ MKSCDGIGKG NYNNLERGGY VWRPQRGLPE RAVTVLRAWL FEHFLHPYPT DSDKVMLAKQ TGLSRNQVSN WFINARVRVW KPMVEEIHML
201: ETNKSSSHIN NNDPEMNLSS SGGVSLTLGL HHQNNNKALS FPRNAARRFG IDPNNIIA

Best Arabidopsis Sequence Match ( AT5G02030.1 )
(BLAST)

001: MADAYEPYHV LQQSRRDKLR IPSLDSHFHF HPPPPPSSGG GGGVFPLADS DFLAAGGFHS NNNNNHISNP SYSNFMGFLG GPSSSSSTAV AVAGDHSFNA
101: GLSSGDVLVF KPEPLSLSLS SHPRLAYDLV VPGVVNSGFC RSAGEANAAA VTIASRSSGP LGPFTGYASI LKGSRFLKPA QMLLDEFCNV GRGIYTDKVI
201: DDDDSSLLFD PTVENLCGVS DGGGGDNGKK KSKLISMLDE VYKRYKQYYE QLQAVMGSFE CVAGLGHAAP YANLALKALS KHFKCLKNAI TDQLQFSHNN
301: KIQQQQQCGH PMNSENKTDS LRFGGSDSSR GLCSAGQRHG FPDHHAPVWR PHRGLPERAV TVLRAWLFDH FLHPYPTDTD KLMLAKQTGL SRNQVSNWFI
401: NARVRVWKPM VEEIHMLETR QSQRSSSSSW RDERTSTTVF PDNSNNNPSS SSAQQRPNNS SPPRRARNDD VHGTNNNNSY VNSGSGGGSA VGFSYGIGSS
501: NVPVMNSSTN GGVSLTLGLH HQIGLPEPFP MTTAQRFGLD GGSGDGGGGY EGQNRQFGRD FIGGSNHQFL HDFVG

Arabidopsis Description

BLH9BEL1-like homeodomain protein 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.