Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
PGSC0003DMT400043083 | Potato | nucleus | 93.22 | 96.21 |
KRH02013 | Soybean | nucleus | 57.63 | 75.84 |
VIT_10s0116g00190.t01 | Wine grape | nucleus | 66.1 | 66.86 |
KRH51140 | Soybean | nucleus | 63.84 | 62.43 |
KRH36506 | Soybean | nucleus | 66.1 | 61.74 |
KRH11492 | Soybean | nucleus | 64.97 | 61.33 |
AT1G62360.1 | Thale cress | nucleus | 64.69 | 59.95 |
Bra027050.1-P | Field mustard | nucleus | 63.28 | 58.64 |
CDY19545 | Canola | nucleus | 63.28 | 58.49 |
CDY12943 | Canola | nucleus | 63.28 | 58.49 |
Solyc04g077210.2.1 | Tomato | nucleus | 43.5 | 43.38 |
KRH73381 | Soybean | cytosol | 27.4 | 42.17 |
Solyc05g005090.2.1 | Tomato | nucleus | 36.72 | 40.62 |
Solyc01g100510.2.1 | Tomato | nucleus | 37.85 | 40.0 |
Solyc03g112740.1.1 | Tomato | nucleus | 15.82 | 30.43 |
Solyc08g041820.2.1 | Tomato | nucleus | 25.71 | 26.07 |
Solyc12g010410.1.1 | Tomato | nucleus | 22.32 | 24.01 |
Solyc08g080120.2.1 | Tomato | nucleus | 20.06 | 22.9 |
Solyc07g007120.2.1 | Tomato | nucleus | 24.01 | 19.72 |
Protein Annotations
Gene3D:1.10.10.60 | MapMan:15.5.3.4 | InterPro:ELK_dom | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 |
GO:GO:0003677 | GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0006139 | GO:GO:0006355 |
GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009653 | GO:GO:0009791 |
GO:GO:0009908 | GO:GO:0009934 | GO:GO:0009987 | GO:GO:0015630 | GO:GO:0042803 | GO:GO:0043565 |
GO:GO:0048440 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom | InterPro:IPR001356 |
InterPro:IPR005539 | UniProt:K4B9Y2 | InterPro:KNOX1 | InterPro:KNOX2 | PFAM:PF03789 | PFAM:PF03790 |
PFAM:PF03791 | PFAM:PF05920 | ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS51213 | PANTHER:PTHR11850 |
PANTHER:PTHR11850:SF100 | SMART:SM00389 | SMART:SM01188 | SMART:SM01255 | SMART:SM01256 | SUPFAM:SSF46689 |
EnsemblPlantsGene:Solyc02g081120.2 | EnsemblPlants:Solyc02g081120.2.1 | UniParc:UPI00027675BE | SEG:seg | : | : |
Description
Homeobox protein SHOOT MERISTEMLESS [Source:Projected from Arabidopsis thaliana (AT1G62360) UniProtKB/Swiss-Prot;Acc:Q38874]
Coordinates
chr2:+:45189213..45196103
Molecular Weight (calculated)
39656.9 Da
IEP (calculated)
6.003
GRAVY (calculated)
-0.699
Length
354 amino acids
Sequence
(BLAST)
(BLAST)
001: MEGGSSGNTS TSCLMMMGYG DHENNNNNNG NGNGNGNGNV TICAPPMMMM MPPPPPSLTN NNNAETSSNN ILFLPFMDNN NNNPQEDNNS SSSSIKSKIM
101: AHPHYHRLLT AYLNCQKIGA PPEVVARLEE ICATSATMGR SSSSSGGGII GEDPALDQFM EAYCEMLTKY EQELSKPFKE AMVFLSRIEC QFKALTLAPN
201: SSHESALGEA MDRNGSSDEE VDVNNSFIDP QAEDRELKGQ LLRKYSGYLG SLKQEFMKKR KKGKLPKEAR QQLVDWWLRH IKWPYPSESQ KLALAESTGL
301: DQKQINNWFI NQRKRHWKPS EDMQFVVMDA AHPHYYMDNV LANHFPMDMT PSLL
101: AHPHYHRLLT AYLNCQKIGA PPEVVARLEE ICATSATMGR SSSSSGGGII GEDPALDQFM EAYCEMLTKY EQELSKPFKE AMVFLSRIEC QFKALTLAPN
201: SSHESALGEA MDRNGSSDEE VDVNNSFIDP QAEDRELKGQ LLRKYSGYLG SLKQEFMKKR KKGKLPKEAR QQLVDWWLRH IKWPYPSESQ KLALAESTGL
301: DQKQINNWFI NQRKRHWKPS EDMQFVVMDA AHPHYYMDNV LANHFPMDMT PSLL
001: MESGSNSTSC PMAFAGDNSD GPMCPMMMMM PPIMTSHQHH GHDHQHQQQE HDGYAYQSHH QQSSSLFLQS LAPPQGTKNK VASSSSPSSC APAYSLMEIH
101: HNEIVAGGIN PCSSSSSSAS VKAKIMAHPH YHRLLAAYVN CQKVGAPPEV VARLEEACSS AAAAAASMGP TGCLGEDPGL DQFMEAYCEM LVKYEQELSK
201: PFKEAMVFLQ RVECQFKSLS LSSPSSFSGY GETAIDRNNN GSSEEEVDMN NEFVDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL
301: DWWSRHYKWP YPSEQQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH HYFMDNVLGN PFPMDHISST ML
101: HNEIVAGGIN PCSSSSSSAS VKAKIMAHPH YHRLLAAYVN CQKVGAPPEV VARLEEACSS AAAAAASMGP TGCLGEDPGL DQFMEAYCEM LVKYEQELSK
201: PFKEAMVFLQ RVECQFKSLS LSSPSSFSGY GETAIDRNNN GSSEEEVDMN NEFVDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL
301: DWWSRHYKWP YPSEQQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH HYFMDNVLGN PFPMDHISST ML
Arabidopsis Description
STMHomeobox protein SHOOT MERISTEMLESS [Source:UniProtKB/Swiss-Prot;Acc:Q38874]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.