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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 6
  • mitochondrion 1
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400043083 Potato nucleus 93.22 96.21
KRH02013 Soybean nucleus 57.63 75.84
VIT_10s0116g00190.t01 Wine grape nucleus 66.1 66.86
KRH51140 Soybean nucleus 63.84 62.43
KRH36506 Soybean nucleus 66.1 61.74
KRH11492 Soybean nucleus 64.97 61.33
AT1G62360.1 Thale cress nucleus 64.69 59.95
Bra027050.1-P Field mustard nucleus 63.28 58.64
CDY19545 Canola nucleus 63.28 58.49
CDY12943 Canola nucleus 63.28 58.49
Solyc04g077210.2.1 Tomato nucleus 43.5 43.38
KRH73381 Soybean cytosol 27.4 42.17
Solyc05g005090.2.1 Tomato nucleus 36.72 40.62
Solyc01g100510.2.1 Tomato nucleus 37.85 40.0
Solyc03g112740.1.1 Tomato nucleus 15.82 30.43
Solyc08g041820.2.1 Tomato nucleus 25.71 26.07
Solyc12g010410.1.1 Tomato nucleus 22.32 24.01
Solyc08g080120.2.1 Tomato nucleus 20.06 22.9
Solyc07g007120.2.1 Tomato nucleus 24.01 19.72
Protein Annotations
Gene3D:1.10.10.60MapMan:15.5.3.4InterPro:ELK_domGO:GO:0000003GO:GO:0003674GO:GO:0003676
GO:GO:0003677GO:GO:0003723GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0005737GO:GO:0005856GO:GO:0006139GO:GO:0006355
GO:GO:0007275GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009653GO:GO:0009791
GO:GO:0009908GO:GO:0009934GO:GO:0009987GO:GO:0015630GO:GO:0042803GO:GO:0043565
GO:GO:0048440InterPro:Homeobox-like_sfInterPro:Homeobox_CSInterPro:Homeobox_KN_domainInterPro:Homeobox_domInterPro:IPR001356
InterPro:IPR005539UniProt:K4B9Y2InterPro:KNOX1InterPro:KNOX2PFAM:PF03789PFAM:PF03790
PFAM:PF03791PFAM:PF05920ScanProsite:PS00027PFscan:PS50071PFscan:PS51213PANTHER:PTHR11850
PANTHER:PTHR11850:SF100SMART:SM00389SMART:SM01188SMART:SM01255SMART:SM01256SUPFAM:SSF46689
EnsemblPlantsGene:Solyc02g081120.2EnsemblPlants:Solyc02g081120.2.1UniParc:UPI00027675BESEG:seg::
Description
Homeobox protein SHOOT MERISTEMLESS [Source:Projected from Arabidopsis thaliana (AT1G62360) UniProtKB/Swiss-Prot;Acc:Q38874]
Coordinates
chr2:+:45189213..45196103
Molecular Weight (calculated)
39656.9 Da
IEP (calculated)
6.003
GRAVY (calculated)
-0.699
Length
354 amino acids
Sequence
(BLAST)
001: MEGGSSGNTS TSCLMMMGYG DHENNNNNNG NGNGNGNGNV TICAPPMMMM MPPPPPSLTN NNNAETSSNN ILFLPFMDNN NNNPQEDNNS SSSSIKSKIM
101: AHPHYHRLLT AYLNCQKIGA PPEVVARLEE ICATSATMGR SSSSSGGGII GEDPALDQFM EAYCEMLTKY EQELSKPFKE AMVFLSRIEC QFKALTLAPN
201: SSHESALGEA MDRNGSSDEE VDVNNSFIDP QAEDRELKGQ LLRKYSGYLG SLKQEFMKKR KKGKLPKEAR QQLVDWWLRH IKWPYPSESQ KLALAESTGL
301: DQKQINNWFI NQRKRHWKPS EDMQFVVMDA AHPHYYMDNV LANHFPMDMT PSLL
Best Arabidopsis Sequence Match ( AT1G62360.1 )
(BLAST)
001: MESGSNSTSC PMAFAGDNSD GPMCPMMMMM PPIMTSHQHH GHDHQHQQQE HDGYAYQSHH QQSSSLFLQS LAPPQGTKNK VASSSSPSSC APAYSLMEIH
101: HNEIVAGGIN PCSSSSSSAS VKAKIMAHPH YHRLLAAYVN CQKVGAPPEV VARLEEACSS AAAAAASMGP TGCLGEDPGL DQFMEAYCEM LVKYEQELSK
201: PFKEAMVFLQ RVECQFKSLS LSSPSSFSGY GETAIDRNNN GSSEEEVDMN NEFVDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL
301: DWWSRHYKWP YPSEQQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH HYFMDNVLGN PFPMDHISST ML
Arabidopsis Description
STMHomeobox protein SHOOT MERISTEMLESS [Source:UniProtKB/Swiss-Prot;Acc:Q38874]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.