Factsheet for AT1G62360.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra027050.1-P	Field mustard	nucleus	92.15	92.15
CDY12943	Canola	nucleus	92.15	91.91
CDY19545	Canola	nucleus	91.62	91.38
KRH02013	Soybean	nucleus	54.71	77.7
VIT_10s0116g00190.t01	Wine grape	nucleus	64.66	70.57
KRH11492	Soybean	nucleus	64.66	65.87
PGSC0003DMT400043083	Potato	nucleus	58.64	65.31
KRH36506	Soybean	nucleus	64.4	64.91
Solyc02g081120.2.1	Tomato	nucleus	59.95	64.69
KRH51140	Soybean	nucleus	61.26	64.64
AT4G08150.1	Thale cress	nucleus	42.67	40.95
AT1G23380.2	Thale cress	nucleus	34.82	40.43
AT1G70510.2	Thale cress	nucleus	32.46	39.49
KRH73381	Soybean	cytosol	23.56	39.13
AT1G62990.1	Thale cress	nucleus	19.63	25.77
AT4G32040.1	Thale cress	nucleus	21.2	21.15
AT5G11060.1	Thale cress	nucleus	21.47	20.87
AT5G25220.1	Thale cress	nucleus	22.51	19.95

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	EntrezGene:842534	UniProt:A0A178WBW0	ProteinID:AAF70849.1	ProteinID:AEE33958.1
ArrayExpress:AT1G62360	EnsemblPlantsGene:AT1G62360	RefSeq:AT1G62360	TAIR:AT1G62360	RefSeq:AT1G62360-TAIR-G	EnsemblPlants:AT1G62360.1
TAIR:AT1G62360.1	EMBL:AY080857	InterPro:ELK_dom	GO:GO:0000003	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003700	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005856	GO:GO:0006139
GO:GO:0006355	GO:GO:0006810	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009506	GO:GO:0009653	GO:GO:0009691	GO:GO:0009791	GO:GO:0009908	GO:GO:0009934
GO:GO:0009987	GO:GO:0010497	GO:GO:0015630	GO:GO:0019827	GO:GO:0030054	GO:GO:0042803
GO:GO:0043565	GO:GO:0048440	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	RefSeq:NP_176426.1	ProteinID:OAP15676.1
PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	PO:PO:0000037	PO:PO:0000230
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007611	PO:PO:0007616
PO:PO:0009009	PO:PO:0009010	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009052
PO:PO:0020100	PO:PO:0025022	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850
PANTHER:PTHR11850:SF100	UniProt:Q38874	SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256
SUPFAM:SSF46689	Symbol:STM	EMBL:U32344	UniParc:UPI0000136112	SEG:seg	:

Description

STMHomeobox protein SHOOT MERISTEMLESS [Source:UniProtKB/Swiss-Prot;Acc:Q38874]

Coordinates

chr1:-:23058582..23062063

Molecular Weight (calculated)

42755.4 Da

IEP (calculated)

6.671

GRAVY (calculated)

-0.652

Length

382 amino acids

Sequence
(BLAST)

001: MESGSNSTSC PMAFAGDNSD GPMCPMMMMM PPIMTSHQHH GHDHQHQQQE HDGYAYQSHH QQSSSLFLQS LAPPQGTKNK VASSSSPSSC APAYSLMEIH
101: HNEIVAGGIN PCSSSSSSAS VKAKIMAHPH YHRLLAAYVN CQKVGAPPEV VARLEEACSS AAAAAASMGP TGCLGEDPGL DQFMEAYCEM LVKYEQELSK
201: PFKEAMVFLQ RVECQFKSLS LSSPSSFSGY GETAIDRNNN GSSEEEVDMN NEFVDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL
301: DWWSRHYKWP YPSEQQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH HYFMDNVLGN PFPMDHISST ML

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.