Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH73380 | Soybean | nucleus | 18.22 | 75.38 |
| KRH51140 | Soybean | nucleus | 96.28 | 71.55 |
| KRH11492 | Soybean | nucleus | 86.99 | 62.4 |
| VIT_10s0116g00190.t01 | Wine grape | nucleus | 80.67 | 62.0 |
| KRH36506 | Soybean | nucleus | 86.62 | 61.48 |
| PGSC0003DMT400043083 | Potato | nucleus | 75.09 | 58.89 |
| Solyc02g081120.2.1 | Tomato | nucleus | 75.84 | 57.63 |
| KRG99390 | Soybean | nucleus | 27.14 | 55.73 |
| AT1G62360.1 | Thale cress | nucleus | 77.7 | 54.71 |
| KRH14756 | Soybean | nucleus | 65.06 | 53.85 |
| Bra027050.1-P | Field mustard | nucleus | 75.46 | 53.14 |
| CDY12943 | Canola | nucleus | 75.46 | 53.0 |
| CDY19545 | Canola | nucleus | 75.46 | 53.0 |
| KRH33819 | Soybean | nucleus | 47.21 | 42.91 |
| KRH69600 | Soybean | nucleus | 47.21 | 41.23 |
| KRG90534 | Soybean | nucleus | 46.84 | 41.04 |
| KRH74562 | Soybean | nucleus | 46.47 | 40.45 |
| KRH45633 | Soybean | nucleus | 47.58 | 39.88 |
| KRH61471 | Soybean | nucleus | 53.16 | 39.61 |
| KRH63561 | Soybean | nucleus | 40.15 | 38.85 |
| KRG88661 | Soybean | nucleus | 53.9 | 37.47 |
| KRH15482 | Soybean | nucleus | 53.53 | 37.4 |
| KRH73381 | Soybean | cytosol | 31.97 | 37.39 |
| KRG96717 | Soybean | nucleus | 42.75 | 36.98 |
| KRH68434 | Soybean | nucleus | 42.01 | 36.81 |
| KRG99387 | Soybean | nucleus | 20.82 | 29.17 |
| KRH27981 | Soybean | nucleus | 27.51 | 26.52 |
| KRH77464 | Soybean | nucleus | 27.51 | 26.33 |
| KRH03996 | Soybean | nucleus | 27.51 | 25.34 |
| KRH57265 | Soybean | nucleus | 27.51 | 25.26 |
| KRH03552 | Soybean | nucleus | 29.37 | 22.9 |
| KRH20116 | Soybean | nucleus | 29.37 | 22.83 |
| KRH37876 | Soybean | nucleus | 29.0 | 21.14 |
| KRH12889 | Soybean | nucleus | 29.0 | 21.08 |
| KRH52385 | Soybean | nucleus | 30.11 | 20.35 |
| KRH15810 | Soybean | nucleus | 30.86 | 20.15 |
| KRH61712 | Soybean | nucleus | 30.11 | 19.71 |
| KRH05245 | Soybean | nucleus | 29.74 | 19.46 |
| KRG98594 | Soybean | extracellular | 5.2 | 17.07 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | EMBL:ACUP02010293 | InterPro:ELK_dom | EnsemblPlantsGene:GLYMA_17G010200 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom |
| InterPro:IPR001356 | InterPro:IPR005539 | UniProt:K7MJC6 | InterPro:KNOX1 | InterPro:KNOX2 | EnsemblPlants:KRH02013 |
| ProteinID:KRH02013 | ProteinID:KRH02013.1 | PFAM:PF03789 | PFAM:PF03790 | PFAM:PF03791 | PFAM:PF05920 |
| ScanProsite:PS00027 | PFscan:PS50071 | PFscan:PS51213 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF100 | SMART:SM00389 |
| SMART:SM01188 | SMART:SM01255 | SMART:SM01256 | SUPFAM:SSF46689 | UniParc:UPI000295F875 | SEG:seg |
Description
hypothetical protein
Coordinates
chr17:+:827936..833331
Molecular Weight (calculated)
30752.6 Da
IEP (calculated)
6.942
GRAVY (calculated)
-0.645
Length
269 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIPNNNYGG SSSSAIKAKI MAHPHYHRLL AAYVNCQKVG APPEVMGRLE EACASAAVTM AGGTASIGED PELDQFMEAY CEMLIKYEQE LSKPFKEAML
101: FLQRIECQFK SLTISSSLDT TACNEAIDRN GSSDDVDVQT NIIDPQAEDQ ELKGQLLRKY RGYLGSLKQE FTKKRKKGKL PKEARQQLLE WWSRHYKWPY
201: PSESQKLALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQF VVVDPSHPHY YMENVLGNPF PMNLSHTML
101: FLQRIECQFK SLTISSSLDT TACNEAIDRN GSSDDVDVQT NIIDPQAEDQ ELKGQLLRKY RGYLGSLKQE FTKKRKKGKL PKEARQQLLE WWSRHYKWPY
201: PSESQKLALA ESTGLDQKQI NNWFINQRKR HWKPSEDMQF VVVDPSHPHY YMENVLGNPF PMNLSHTML
001: MESGSNSTSC PMAFAGDNSD GPMCPMMMMM PPIMTSHQHH GHDHQHQQQE HDGYAYQSHH QQSSSLFLQS LAPPQGTKNK VASSSSPSSC APAYSLMEIH
101: HNEIVAGGIN PCSSSSSSAS VKAKIMAHPH YHRLLAAYVN CQKVGAPPEV VARLEEACSS AAAAAASMGP TGCLGEDPGL DQFMEAYCEM LVKYEQELSK
201: PFKEAMVFLQ RVECQFKSLS LSSPSSFSGY GETAIDRNNN GSSEEEVDMN NEFVDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL
301: DWWSRHYKWP YPSEQQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH HYFMDNVLGN PFPMDHISST ML
101: HNEIVAGGIN PCSSSSSSAS VKAKIMAHPH YHRLLAAYVN CQKVGAPPEV VARLEEACSS AAAAAASMGP TGCLGEDPGL DQFMEAYCEM LVKYEQELSK
201: PFKEAMVFLQ RVECQFKSLS LSSPSSFSGY GETAIDRNNN GSSEEEVDMN NEFVDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL
301: DWWSRHYKWP YPSEQQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH HYFMDNVLGN PFPMDHISST ML
Arabidopsis Description
STMHomeobox protein SHOOT MERISTEMLESS [Source:UniProtKB/Swiss-Prot;Acc:Q38874]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.