Factsheet for Bra027050.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005703.1-P
Bra007056.1-P
Bra009618.1-P
Bra011403.1-P
Bra025497.1-P
Bra027006.1-P
Bra028883.1-P
Bra036636.1-P
Bra037031.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62360.1	Bra027006.1-P	AT1G62990.1	15781858
AT1G62360.1	Bra036636.1-P	AT1G62990.1	15781858
AT1G62360.1	Bra007056.1-P	AT3G54220.1	17785527
AT1G62360.1	Bra011403.1-P	AT4G32980.1	15781858
AT1G62360.1	Bra037031.1-P	AT4G32980.1	15781858
AT1G62360.1	Bra011403.1-P	AT4G32980.1	16513846
AT1G62360.1	Bra037031.1-P	AT4G32980.1	16513846
AT1G62360.1	Bra011403.1-P	AT4G32980.1	17785527
AT1G62360.1	Bra037031.1-P	AT4G32980.1	17785527
AT1G62360.1	Bra005703.1-P	AT5G02030.1	12897247
AT1G62360.1	Bra009618.1-P	AT5G02030.1	12897247
AT1G62360.1	Bra028883.1-P	AT5G02030.1	12897247
AT1G62360.1	Bra005703.1-P	AT5G02030.1	15019989
AT1G62360.1	Bra009618.1-P	AT5G02030.1	15019989
AT1G62360.1	Bra028883.1-P	AT5G02030.1	15019989
AT1G62360.1	Bra005703.1-P	AT5G02030.1	15781858
AT1G62360.1	Bra009618.1-P	AT5G02030.1	15781858
AT1G62360.1	Bra028883.1-P	AT5G02030.1	15781858
AT1G62360.1	Bra005703.1-P	AT5G02030.1	16513846
AT1G62360.1	Bra009618.1-P	AT5G02030.1	16513846
AT1G62360.1	Bra028883.1-P	AT5G02030.1	16513846
AT1G62360.1	Bra025497.1-P	AT5G41410.1	11701881
AT1G62360.1	Bra025497.1-P	AT5G41410.1	15781858
AT1G62360.1	Bra025497.1-P	AT5G41410.1	17873098

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12943	Canola	nucleus	100.0	99.74
CDY19545	Canola	nucleus	99.21	98.96
AT1G62360.1	Thale cress	nucleus	92.15	92.15
KRH02013	Soybean	nucleus	53.14	75.46
VIT_10s0116g00190.t01	Wine grape	nucleus	62.04	67.71
PGSC0003DMT400043083	Potato	nucleus	57.07	63.56
Solyc02g081120.2.1	Tomato	nucleus	58.64	63.28
KRH11492	Soybean	nucleus	61.78	62.93
KRH51140	Soybean	nucleus	59.42	62.71
KRH36506	Soybean	nucleus	61.26	61.74
Bra016348.1-P	Field mustard	nucleus	34.03	41.4
Bra000638.1-P	Field mustard	nucleus	41.1	40.57
Bra024591.1-P	Field mustard	nucleus	34.55	40.24
Bra007920.1-P	Field mustard	nucleus	34.03	39.76
KRH73381	Soybean	cytosol	23.3	38.7
Bra024592.1-P	Field mustard	nucleus	14.92	26.89
Bra024593.1-P	Field mustard	nucleus	14.4	26.32
Bra036636.1-P	Field mustard	nucleus	19.37	25.17
Bra027006.1-P	Field mustard	nucleus	19.11	24.75
Bra006085.1-P	Field mustard	nucleus	21.47	21.24
Bra011317.1-P	Field mustard	nucleus	20.68	21.12
Bra028554.1-P	Field mustard	nucleus	20.94	20.67
Bra023965.1-P	Field mustard	nucleus	20.68	20.63
Bra009826.1-P	Field mustard	nucleus	20.16	18.6
Bra020491.1-P	Field mustard	nucleus	16.75	16.29

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	EnsemblPlantsGene:Bra027050	EnsemblPlants:Bra027050.1	EnsemblPlants:Bra027050.1-P	InterPro:ELK_dom
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005856	GO:GO:0006139	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009653	GO:GO:0009791	GO:GO:0009908	GO:GO:0009934	GO:GO:0009987
GO:GO:0015630	GO:GO:0042803	GO:GO:0043565	GO:GO:0048440	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS
InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2
UniProt:M4EE39	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	ScanProsite:PS00027
PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF100	SMART:SM00389	SMART:SM01188
SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689	UniParc:UPI000254256F	SEG:seg	:

Description

AT1G62360 (E=9e-163) STM, BUM1, SHL, WAM1, BUM, WAM | STM (SHOOT MERISTEMLESS); transcription factor

Coordinates

chrA09:+:7962558..7965439

Molecular Weight (calculated)

43012.7 Da

IEP (calculated)

6.588

GRAVY (calculated)

-0.704

Length

382 amino acids

Sequence
(BLAST)

001: MESGSNSTSC PMAFAGDNSD GPMCPMMMMM MPVITSHQQH HGHDQQHQHQ QQHDGYAYQS HHQQSSSLFL QSLTPPSQEA KNKVTSSCSP SSGAPAYSFM
101: EINHQNELLA GGLNPCSSAS VKAKIMGHPH YHRLLLAYVN CQKVGAPPEV QARLEETCSS AAAAAASMGP TGSLGEDPGL DQFMEAYCEM LVKYEQELSK
201: PFKEAMVFLQ HVECQFKSLS LSSPSSFSGY GEAAIERNNN GSSEEEVDMN NEFVDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL
301: DWWSRHYKWP YPSEQQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH HYFMDNVMGN PFPIDHISST ML

Best Arabidopsis Sequence Match ( AT1G62360.1 )
(BLAST)

001: MESGSNSTSC PMAFAGDNSD GPMCPMMMMM PPIMTSHQHH GHDHQHQQQE HDGYAYQSHH QQSSSLFLQS LAPPQGTKNK VASSSSPSSC APAYSLMEIH
101: HNEIVAGGIN PCSSSSSSAS VKAKIMAHPH YHRLLAAYVN CQKVGAPPEV VARLEEACSS AAAAAASMGP TGCLGEDPGL DQFMEAYCEM LVKYEQELSK
201: PFKEAMVFLQ RVECQFKSLS LSSPSSFSGY GETAIDRNNN GSSEEEVDMN NEFVDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL
301: DWWSRHYKWP YPSEQQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH HYFMDNVLGN PFPMDHISST ML

Arabidopsis Description

STMHomeobox protein SHOOT MERISTEMLESS [Source:UniProtKB/Swiss-Prot;Acc:Q38874]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.