Factsheet for Bra024592.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024593.1-P	Field mustard	nucleus	93.4	94.74
CDY41448	Canola	nucleus	80.66	82.21
Bra024591.1-P	Field mustard	nucleus	94.34	60.98
KRG99387	Soybean	nucleus	54.25	59.9
Bra016348.1-P	Field mustard	nucleus	81.6	55.1
AT1G23380.2	Thale cress	nucleus	83.02	53.5
Bra007920.1-P	Field mustard	nucleus	67.45	43.73
VIT_01s0127g00210.t01	Wine grape	nucleus	60.85	40.57
KRH45633	Soybean	nucleus	59.43	39.25
KRH74562	Soybean	nucleus	57.08	39.16
KRH69600	Soybean	nucleus	55.19	37.99
Solyc05g005090.2.1	Tomato	nucleus	48.11	31.88
PGSC0003DMT400035095	Potato	nucleus	49.06	30.23
Bra000638.1-P	Field mustard	nucleus	29.72	16.28
Bra027050.1-P	Field mustard	nucleus	26.89	14.92
Bra036636.1-P	Field mustard	nucleus	18.4	13.27
Bra027006.1-P	Field mustard	nucleus	17.92	12.88
Bra020491.1-P	Field mustard	nucleus	21.23	11.45
Bra006085.1-P	Field mustard	nucleus	20.28	11.14
Bra009826.1-P	Field mustard	nucleus	21.7	11.11
Bra028554.1-P	Field mustard	nucleus	19.81	10.85
Bra011317.1-P	Field mustard	nucleus	16.98	9.63
Bra023965.1-P	Field mustard	nucleus	16.51	9.14
KRG99390	Soybean	nucleus	1.89	3.05

Protein Annotations

EnsemblPlants:Bra024592.1	EnsemblPlants:Bra024592.1-P	EnsemblPlantsGene:Bra024592	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	InterPro:KNOX1
InterPro:KNOX2	PANTHER:PTHR11850	PANTHER:PTHR11850:SF99	PFAM:PF03790	PFAM:PF03791	SEG:seg
SMART:SM01255	SMART:SM01256	UniParc:UPI000254298F	UniProt:M4E737	MapMan:15.5.3.4	:

Description

AT1G23380 (E=6e-082) KNAT6, KNAT6L, KNAT6S | KNAT6; DNA binding / transcription activator/ transcription factor

Coordinates

chrA09:+:24185418..24186481

Molecular Weight (calculated)

23448.9 Da

IEP (calculated)

4.256

GRAVY (calculated)

-0.077

Length

212 amino acids

Sequence
(BLAST)

001: MDGMYGFHPT DGDYSDKAVL MMSPDNLMFP SDYQTLLCSS AGDNRVSDVF GSDELLSAAA SALSSEAASI APEIPRNDDK VSLGVIKGKI ACHPLYPRLL
101: QAYIDCQKVG APPEIACLLE EIQRESHVHK QNVVPLSSSF GADPELDEFM ETYCDILVKY KSDLARPFDE ATTFLNKIEM QLRNLCTGVE SDRGLSGMSL
201: WFSFFIWLII SQ

Best Arabidopsis Sequence Match ( AT1G23380.1 )
(BLAST)

001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE

Arabidopsis Description

KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.