Factsheet for Bra016348.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41449	Canola	nucleus	38.22	99.17
CDX91713	Canola	nucleus	98.73	98.73
Bra024591.1-P	Field mustard	nucleus	89.49	85.67
AT1G23380.2	Thale cress	nucleus	86.31	82.37
Bra024593.1-P	Field mustard	nucleus	54.78	82.3
Bra024592.1-P	Field mustard	nucleus	55.1	81.6
Bra007920.1-P	Field mustard	nucleus	74.2	71.25
KRG99390	Soybean	nucleus	28.03	67.18
KRH74562	Soybean	nucleus	64.65	65.7
KRH69600	Soybean	nucleus	64.01	65.26
VIT_01s0127g00210.t01	Wine grape	nucleus	65.61	64.78
KRH45633	Soybean	nucleus	64.65	63.24
KRG99387	Soybean	nucleus	33.76	55.21
Solyc05g005090.2.1	Tomato	nucleus	54.78	53.75
PGSC0003DMT400035095	Potato	nucleus	57.32	52.33
Bra000638.1-P	Field mustard	nucleus	43.31	35.14
Bra027050.1-P	Field mustard	nucleus	41.4	34.03
Bra036636.1-P	Field mustard	nucleus	25.48	27.21
Bra027006.1-P	Field mustard	nucleus	25.16	26.78
Bra006085.1-P	Field mustard	nucleus	28.34	23.06
Bra028554.1-P	Field mustard	nucleus	27.71	22.48
Bra011317.1-P	Field mustard	nucleus	26.75	22.46
Bra023965.1-P	Field mustard	nucleus	26.43	21.67
Bra009826.1-P	Field mustard	nucleus	26.43	20.05
Bra020491.1-P	Field mustard	nucleus	22.61	18.07

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	EnsemblPlantsGene:Bra016348	EnsemblPlants:Bra016348.1	EnsemblPlants:Bra016348.1-P	InterPro:ELK_dom
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	UniProt:M4DIM1	PFAM:PF03789	PFAM:PF03790
PFAM:PF03791	PFAM:PF05920	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF99
SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689	UniParc:UPI00025463E2
SEG:seg	:	:	:	:	:

Description

AT1G23380 (E=2e-139) KNAT6, KNAT6L, KNAT6S | KNAT6; DNA binding / transcription activator/ transcription factor

Coordinates

chrA08:+:17997657..18002885

Molecular Weight (calculated)

35163.5 Da

IEP (calculated)

4.915

GRAVY (calculated)

-0.536

Length

314 amino acids

Sequence
(BLAST)

001: MDGMYGFHPT CDYSDKPVMM MSQDNLMFPS DYQTLLCSSA GDNRVSDVFG SNELLSVAAS AMSSEAASMG PEIRTNNGNV SLGVVKAKIA CHPSYPRLLQ
101: AYMDCQKVGA PPEIAYLLEE IQRESHVYKQ GVAPSSSCFG ADPELDEFME TYCEILVKYK SDLARPFDEA TTFLNKIEMQ LRNLCTGVES ARGLSEDGAV
201: SSDEELSGGD EISQDGKQIC EDRDLKDRLL RKFGSGISSL KLEFSKKKKK GKLPREARQA LLDWWSVHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWNQSEN MPFA

Best Arabidopsis Sequence Match ( AT1G23380.1 )
(BLAST)

001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE

Arabidopsis Description

KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.