Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG99390 | Soybean | nucleus | 72.73 | 67.18 |
| CDY69524 | Canola | nucleus | 91.74 | 54.41 |
| CDY70923 | Canola | nucleus | 91.74 | 54.15 |
| Bra016348.1-P | Field mustard | nucleus | 99.17 | 38.22 |
| CDX91713 | Canola | nucleus | 98.35 | 37.9 |
| CDY34012 | Canola | nucleus | 58.68 | 36.79 |
| AT1G23380.2 | Thale cress | nucleus | 88.43 | 32.52 |
| KRH69600 | Soybean | nucleus | 77.69 | 30.52 |
| CDY09448 | Canola | nucleus | 81.82 | 30.28 |
| CDY03742 | Canola | nucleus | 81.82 | 30.28 |
| KRH74562 | Soybean | nucleus | 76.86 | 30.1 |
| KRH45633 | Soybean | nucleus | 75.21 | 28.35 |
| VIT_01s0127g00210.t01 | Wine grape | nucleus | 71.07 | 27.04 |
| Solyc05g005090.2.1 | Tomato | nucleus | 66.94 | 25.31 |
| PGSC0003DMT400035095 | Potato | nucleus | 71.07 | 25.0 |
| CDX93852 | Canola | nucleus | 41.32 | 22.52 |
| CDX83145 | Canola | nucleus | 64.46 | 19.4 |
| CDY12943 | Canola | nucleus | 61.16 | 19.32 |
| CDY19545 | Canola | nucleus | 61.16 | 19.32 |
| CDY45968 | Canola | nucleus | 41.32 | 17.06 |
| CDY66559 | Canola | nucleus | 40.5 | 16.67 |
| CDY64892 | Canola | nucleus | 40.5 | 16.67 |
| CDX88165 | Canola | nucleus | 39.67 | 16.05 |
| CDY68624 | Canola | nucleus | 40.5 | 14.04 |
| CDX68812 | Canola | nucleus | 41.32 | 13.37 |
| CDX75215 | Canola | nucleus | 41.32 | 13.37 |
| CDY13472 | Canola | nucleus | 41.32 | 13.09 |
| CDX72343 | Canola | nucleus | 41.32 | 12.5 |
| CDX78407 | Canola | nucleus | 39.67 | 12.44 |
| CDY51104 | Canola | nucleus | 39.67 | 12.21 |
| CDX85732 | Canola | nucleus | 39.67 | 12.21 |
| CDY05371 | Canola | nucleus | 39.67 | 11.88 |
| CDY05480 | Canola | nucleus | 39.67 | 11.43 |
| CDX80491 | Canola | nucleus | 39.67 | 10.81 |
| CDX70374 | Canola | nucleus | 24.79 | 9.93 |
| CDY44142 | Canola | nucleus | 10.74 | 5.53 |
| CDY04722 | Canola | nucleus | 8.26 | 4.52 |
| CDY41448 | Canola | nucleus | 3.31 | 1.92 |
| KRG99387 | Soybean | nucleus | 1.65 | 1.04 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | GO:A0A078HVR4 | UniProt:A0A078HVR4 | EnsemblPlants:CDY41449 | ProteinID:CDY41449 |
| ProteinID:CDY41449.1 | InterPro:ELK_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00073050001 | InterPro:Homeobox-like_sf |
| InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR005539 | PFAM:PF03789 | PFAM:PF05920 |
| PFscan:PS50071 | PFscan:PS51213 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF99 | SMART:SM00389 | SMART:SM01188 |
| SUPFAM:SSF46689 | UniParc:UPI0004EEB8DD | SEG:seg | : | : | : |
Description
BnaA08g20510DBnaA08g20510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HVR4]
Coordinates
chrLK032498:+:73148..76000
Molecular Weight (calculated)
14028.5 Da
IEP (calculated)
9.529
GRAVY (calculated)
-1.002
Length
121 amino acids
Sequence
(BLAST)
(BLAST)
001: MFKDGAVSSD EELSGGDEIS QDGKQICEDR DLKDRLLRKF GSGISSLKLE FSKKKKKGKL PREARQALLD WWSVHYKWPY PTEGDKIALA DATGLDQKQI
101: NNWFINQRKR HWNQSENMPF A
101: NNWFINQRKR HWNQSENMPF A
001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE
Arabidopsis Description
KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.