Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024591.1-P | Field mustard | nucleus | 89.06 | 89.33 |
| CDY41449 | Canola | nucleus | 32.52 | 88.43 |
| Bra016348.1-P | Field mustard | nucleus | 82.37 | 86.31 |
| CDX91713 | Canola | nucleus | 81.76 | 85.67 |
| Bra024593.1-P | Field mustard | nucleus | 53.19 | 83.73 |
| Bra024592.1-P | Field mustard | nucleus | 53.5 | 83.02 |
| CDY04722 | Canola | nucleus | 54.41 | 81.0 |
| CDY41448 | Canola | nucleus | 51.06 | 80.77 |
| CDY44142 | Canola | nucleus | 56.23 | 78.72 |
| AT1G70510.2 | Thale cress | nucleus | 71.43 | 74.84 |
| KRG99390 | Soybean | nucleus | 28.88 | 72.52 |
| KRH74562 | Soybean | nucleus | 66.26 | 70.55 |
| VIT_01s0127g00210.t01 | Wine grape | nucleus | 67.78 | 70.13 |
| KRH69600 | Soybean | nucleus | 65.05 | 69.48 |
| KRH45633 | Soybean | nucleus | 66.57 | 68.22 |
| CDY69524 | Canola | nucleus | 41.64 | 67.16 |
| CDY70923 | Canola | nucleus | 41.03 | 65.85 |
| KRG99387 | Soybean | nucleus | 34.65 | 59.38 |
| Solyc05g005090.2.1 | Tomato | nucleus | 56.23 | 57.81 |
| PGSC0003DMT400035095 | Potato | nucleus | 58.05 | 55.52 |
| AT4G08150.1 | Thale cress | nucleus | 42.86 | 35.43 |
| AT1G62360.1 | Thale cress | nucleus | 40.43 | 34.82 |
| AT1G62990.1 | Thale cress | nucleus | 25.23 | 28.52 |
| AT5G11060.1 | Thale cress | nucleus | 26.75 | 22.39 |
| AT4G32040.1 | Thale cress | nucleus | 25.53 | 21.93 |
| AT5G25220.1 | Thale cress | nucleus | 27.36 | 20.88 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | EntrezGene:838946 | ProteinID:AEE30380.1 | ArrayExpress:AT1G23380 | EnsemblPlantsGene:AT1G23380 |
| RefSeq:AT1G23380 | TAIR:AT1G23380 | RefSeq:AT1G23380-TAIR-G | EnsemblPlants:AT1G23380.2 | TAIR:AT1G23380.2 | Unigene:At.26286 |
| InterPro:ELK_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS |
| InterPro:Homeobox_KN_domain | InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR005539 | Symbol:KNAT6 | InterPro:KNOX1 |
| InterPro:KNOX2 | RefSeq:NP_173752.3 | PFAM:PF03789 | PFAM:PF03790 | PFAM:PF03791 | PFAM:PF05920 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0020100 | PO:PO:0025022 | ScanProsite:PS00027 | PFscan:PS50071 |
| PFscan:PS51213 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF99 | SMART:SM00389 | SMART:SM01188 | SMART:SM01255 |
| SMART:SM01256 | SUPFAM:SSF46689 | UniParc:UPI0001505794 | SEG:seg | : | : |
Description
KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
Coordinates
chr1:-:8297291..8302600
Molecular Weight (calculated)
37191.8 Da
IEP (calculated)
4.670
GRAVY (calculated)
-0.542
Length
329 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKKQV GAPPEIACLL EEIQRESDVY KQEVVPSSCF GADPELDEFM ETYCDILVKY KSDLARPFDE ATCFLNKIEM QLRNLCTGVE SARGVSEDGV
201: ISSDEELSGG DHEVAEDGRQ RCEDRDLKDR LLRKFGSRIS TLKLEFSKKK KKGKLPREAR QALLDWWNLH YKWPYPTEGD KIALADATGL DQKQINNWFI
301: NQRKRHWKPS ENMPFAMMDD SSGSFFTEE
101: AYIDCQKKQV GAPPEIACLL EEIQRESDVY KQEVVPSSCF GADPELDEFM ETYCDILVKY KSDLARPFDE ATCFLNKIEM QLRNLCTGVE SARGVSEDGV
201: ISSDEELSGG DHEVAEDGRQ RCEDRDLKDR LLRKFGSRIS TLKLEFSKKK KKGKLPREAR QALLDWWNLH YKWPYPTEGD KIALADATGL DQKQINNWFI
301: NQRKRHWKPS ENMPFAMMDD SSGSFFTEE
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.