Factsheet for PGSC0003DMT400035095

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g005090.2.1	Tomato	nucleus	85.17	91.56
CDY41449	Canola	nucleus	25.0	71.07
KRG99390	Soybean	nucleus	25.58	67.18
VIT_01s0127g00210.t01	Wine grape	nucleus	58.14	62.89
KRH74562	Soybean	nucleus	55.81	62.14
KRH69600	Soybean	nucleus	55.23	61.69
KRH45633	Soybean	nucleus	55.81	59.81
Bra024591.1-P	Field mustard	nucleus	56.1	58.84
AT1G23380.2	Thale cress	nucleus	55.52	58.05
CDY03742	Canola	nucleus	54.94	57.8
CDY09448	Canola	nucleus	54.94	57.8
AT1G70510.2	Thale cress	nucleus	52.62	57.64
Bra007920.1-P	Field mustard	nucleus	54.65	57.49
CDX91713	Canola	nucleus	52.33	57.32
Bra016348.1-P	Field mustard	nucleus	52.33	57.32
PGSC0003DMT400087440	Potato	nucleus	19.77	53.97
KRG99387	Soybean	nucleus	29.36	52.6
CDY69524	Canola	nucleus	30.52	51.47
CDY70923	Canola	nucleus	29.94	50.24
Bra024592.1-P	Field mustard	nucleus	30.23	49.06
Bra024593.1-P	Field mustard	nucleus	29.65	48.8
CDY04722	Canola	nucleus	31.1	48.42
CDY41448	Canola	nucleus	28.49	47.12
CDY44142	Canola	nucleus	31.69	46.38
PGSC0003DMT400007159	Potato	nucleus	41.28	44.1
PGSC0003DMT400043083	Potato	nucleus	40.12	40.23
PGSC0003DMT400046618	Potato	nucleus	18.9	39.16
PGSC0003DMT400012712	Potato	nucleus	38.37	36.67
PGSC0003DMT400058528	Potato	nucleus	22.38	24.68
PGSC0003DMT400040351	Potato	nucleus	24.71	23.29
PGSC0003DMT400020407	Potato	nucleus	22.38	22.65
PGSC0003DMT400078990	Potato	nucleus	24.13	20.0

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	ProteinID:AAB41849	ProteinID:AAB41849.1	InterPro:ELK_dom	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0043565	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	UniProt:M1B1T5	PFAM:PF03789
PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	EnsemblPlantsGene:PGSC0003DMG400013493	PGSC:PGSC0003DMG400013493	EnsemblPlants:PGSC0003DMT400035095
ScanProsite:PS00027	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF99	SMART:SM00389
SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689	EMBL:U65648	UniParc:UPI000294EAE5
SEG:seg	:	:	:	:	:

Description

POTH1 [Source:PGSC_GENE;Acc:PGSC0003DMG400013493]

Coordinates

chr5:+:9248324..9258140

Molecular Weight (calculated)

39149.4 Da

IEP (calculated)

4.685

GRAVY (calculated)

-0.848

Length

344 amino acids

Sequence
(BLAST)

001: MDDEMYGFHS TRDDYADKAL MSPENLMMQT EYNNFHNYTN SSILTSNPMM FGSDDIQLSS EQTNSFSTMT LQNNDNIYQI RSGNCGGGSG SGGSSKDYHD
101: NNDNNNNNED GSNVIKAKIV SHPYYPKLLN AYIDCQKVGA PASIVNLLEE IRQQTDFRKP NATSICIGAD PELDEFMETY CDILLKYKSD LSRPFDEATT
201: FLHKIEMQLG NLCKDDGGVS SDEELSCGEA DASMRSEDNE LKDRLLRKFG SHLSSLKLEF SKKKKKGKLP KEARQMLLAW WDDHFRWPYP TEADKNSLAE
301: STGLDPKQIN NWFINQRKRH WKPSENMQLA VMDNLSSQFF SSDD

Best Arabidopsis Sequence Match ( AT1G23380.1 )
(BLAST)

001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE

Arabidopsis Description

KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.