Factsheet for PGSC0003DMT400043083

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400032122
PGSC0003DMT400043358
PGSC0003DMT400049235
PGSC0003DMT400058528
PGSC0003DMT400062353
PGSC0003DMT400076995

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G62360.1	PGSC0003DMT400058528	AT1G62990.1	15781858
AT1G62360.1	PGSC0003DMT400043358	AT3G54220.1	17785527
AT1G62360.1	PGSC0003DMT400076995	AT4G32980.1	15781858
AT1G62360.1	PGSC0003DMT400076995	AT4G32980.1	16513846
AT1G62360.1	PGSC0003DMT400076995	AT4G32980.1	17785527
AT1G62360.1	PGSC0003DMT400049235	AT5G02030.1	12897247
AT1G62360.1	PGSC0003DMT400062353	AT5G02030.1	12897247
AT1G62360.1	PGSC0003DMT400049235	AT5G02030.1	15019989
AT1G62360.1	PGSC0003DMT400062353	AT5G02030.1	15019989
AT1G62360.1	PGSC0003DMT400049235	AT5G02030.1	15781858
AT1G62360.1	PGSC0003DMT400062353	AT5G02030.1	15781858
AT1G62360.1	PGSC0003DMT400049235	AT5G02030.1	16513846
AT1G62360.1	PGSC0003DMT400062353	AT5G02030.1	16513846
AT1G62360.1	PGSC0003DMT400032122	AT5G41410.1	11701881
AT1G62360.1	PGSC0003DMT400032122	AT5G41410.1	15781858
AT1G62360.1	PGSC0003DMT400032122	AT5G41410.1	17873098

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc02g081120.2.1	Tomato	nucleus	96.21	93.22
KRH02013	Soybean	nucleus	58.89	75.09
VIT_10s0116g00190.t01	Wine grape	nucleus	68.22	66.86
KRH51140	Soybean	nucleus	65.6	62.15
KRH36506	Soybean	nucleus	67.35	60.95
KRH11492	Soybean	nucleus	66.47	60.8
AT1G62360.1	Thale cress	nucleus	65.31	58.64
Bra027050.1-P	Field mustard	nucleus	63.56	57.07
CDY19545	Canola	nucleus	63.56	56.92
CDY12943	Canola	nucleus	63.56	56.92
PGSC0003DMT400087440	Potato	nucleus	18.66	50.79
PGSC0003DMT400012712	Potato	nucleus	44.61	42.5
PGSC0003DMT400007159	Potato	nucleus	38.48	40.99
KRH73381	Soybean	cytosol	27.41	40.87
PGSC0003DMT400035095	Potato	nucleus	40.23	40.12
PGSC0003DMT400046618	Potato	nucleus	13.99	28.92
PGSC0003DMT400040351	Potato	nucleus	25.66	24.11
PGSC0003DMT400020407	Potato	nucleus	23.03	23.24
PGSC0003DMT400058528	Potato	nucleus	20.7	22.76
PGSC0003DMT400078990	Potato	nucleus	24.49	20.24

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102581859	MapMan:15.5.3.4	InterPro:ELK_dom	GO:GO:0000003	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003723	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737	GO:GO:0005856	GO:GO:0006139
GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009653
GO:GO:0009791	GO:GO:0009908	GO:GO:0009934	GO:GO:0009987	GO:GO:0015630	GO:GO:0042803
GO:GO:0043565	GO:GO:0048440	InterPro:Homeobox-like_sf	InterPro:Homeobox_CS	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom
InterPro:IPR001356	InterPro:IPR005539	EMBL:KJ477687	InterPro:KNOX1	InterPro:KNOX2	UniProt:M1BE18
RefSeq:NP_001278851.1	PFAM:PF03789	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	EnsemblPlantsGene:PGSC0003DMG400016711
PGSC:PGSC0003DMG400016711	EnsemblPlants:PGSC0003DMT400043083	ScanProsite:PS00027	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850
PANTHER:PTHR11850:SF100	SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689
UniParc:UPI000296BED6	SEG:seg	:	:	:	:

Description

Homeobox protein knotted-1-like LET6 [Source:PGSC_GENE;Acc:PGSC0003DMG400016711]

Coordinates

chr2:+:36798230..36803111

Molecular Weight (calculated)

38700.9 Da

IEP (calculated)

5.841

GRAVY (calculated)

-0.681

Length

343 amino acids

Sequence
(BLAST)

001: MEGGNTNTSC LMMMGYGDHE NNNNGNGNAS LCAPQMMMMM PPPPPSLTNN NNAETSNNNN ILFLPFMDTN NNNPQEDNNS SSSSSIKSKI MAHPHYPRLL
101: AAYLSCQKIG APPEVVARLE EICATSATMG RNSSSGGIIG EDPALDQFME AYCEMLTKYE QELSKPFKEA MVFLSRIECQ FKALTLAPNS SHESALGEAM
201: DRNGSSDEEV DVNNSFIDPQ AEDRELKGQL LRKYSGYLGS LKQEFMKKRK KGKLPKEARQ QLVDWWLRHI KWPYPSESQK LALAESTGLD QKQINNWFIN
301: QRKRHWKPSE DMQFVVMDAA HPHYYMDNVL ANHFPMDMTP SLL

Best Arabidopsis Sequence Match ( AT1G62360.1 )
(BLAST)

001: MESGSNSTSC PMAFAGDNSD GPMCPMMMMM PPIMTSHQHH GHDHQHQQQE HDGYAYQSHH QQSSSLFLQS LAPPQGTKNK VASSSSPSSC APAYSLMEIH
101: HNEIVAGGIN PCSSSSSSAS VKAKIMAHPH YHRLLAAYVN CQKVGAPPEV VARLEEACSS AAAAAASMGP TGCLGEDPGL DQFMEAYCEM LVKYEQELSK
201: PFKEAMVFLQ RVECQFKSLS LSSPSSFSGY GETAIDRNNN GSSEEEVDMN NEFVDPQAED RELKGQLLRK YSGYLGSLKQ EFMKKRKKGK LPKEARQQLL
301: DWWSRHYKWP YPSEQQKLAL AESTGLDQKQ INNWFINQRK RHWKPSEDMQ FVVMDATHPH HYFMDNVLGN PFPMDHISST ML

Arabidopsis Description

STMHomeobox protein SHOOT MERISTEMLESS [Source:UniProtKB/Swiss-Prot;Acc:Q38874]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.