Factsheet for PGSC0003DMT400020407

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g010410.1.1	Tomato	nucleus	93.82	96.96
Os08t0292900-01	Rice	nucleus, plasma membrane	45.59	73.46
KRH03552	Soybean	nucleus	65.29	64.35
KRH20116	Soybean	nucleus	65.0	63.87
KRH37876	Soybean	nucleus	66.18	60.98
KRH12889	Soybean	nucleus	66.18	60.81
GSMUA_Achr3P13370_001	Banana	nucleus	62.06	59.1
GSMUA_Achr7P05170_001	Banana	nucleus	66.47	57.51
PGSC0003DMT400040351	Potato	nucleus	60.88	56.71
GSMUA_Achr1P26000_001	Banana	nucleus	60.88	56.1
GSMUA_Achr4P20400_001	Banana	nucleus	62.94	55.73
PGSC0003DMT400078990	Potato	nucleus	67.65	55.42
GSMUA_Achr10P...	Banana	nucleus	62.65	54.34
PGSC0003DMT400058528	Potato	nucleus	48.82	53.21
VIT_11s0118g00800.t01	Wine grape	nucleus	64.71	51.16
PGSC0003DMT400087440	Potato	nucleus	12.94	34.92
PGSC0003DMT400007159	Potato	nucleus	25.59	27.02
PGSC0003DMT400012712	Potato	nucleus	24.71	23.33
PGSC0003DMT400043083	Potato	nucleus	23.24	23.03
PGSC0003DMT400035095	Potato	nucleus	22.65	22.38
PGSC0003DMT400046618	Potato	nucleus	9.12	18.67

Protein Annotations

Gene3D:1.10.10.60	EntrezGene:102584843	MapMan:15.5.3.4	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356	InterPro:IPR005539	InterPro:KNOX1
InterPro:KNOX2	UniProt:M1ADF4	PFAM:PF03790	PFAM:PF03791	PFAM:PF05920	EnsemblPlantsGene:PGSC0003DMG400007887
PGSC:PGSC0003DMG400007887	EnsemblPlants:PGSC0003DMT400020407	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF122
SMART:SM00389	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689	UniParc:UPI000295758D	RefSeq:XP_006350068.1
SEG:seg	:	:	:	:	:

Description

Homeobox protein knotted-1-like LET12 [Source:PGSC_GENE;Acc:PGSC0003DMG400007887]

Coordinates

chr12:-:1947560..1951582

Molecular Weight (calculated)

39380.5 Da

IEP (calculated)

5.875

GRAVY (calculated)

-1.019

Length

340 amino acids

Sequence
(BLAST)

001: MEFHDHFSQE LALQQHQQQN VDDDVSDQSM NFNVKLSQQY RDDVNNNEHN NNNNNNSNVW DQSEKYKADI LNHHLSEQLL SAHVACLRIA TPVDQLPRID
101: EQLTESQNLV AKYYVVGQSQ RSLDDKELDQ FMAHYVLLLS SFKEQLQQHV RVHAMEAVMA CWDLDQSLQN LTGVASGEGT GATMSDDDED NQVENETYCH
201: YNGILDGQDS NGFGPLVPTE NERFLMERVR QELKQEFKQD YKGKIVDIRE EILRKRRAGK LPGDTTSALK AWWKSHSKWP YPTEEDKAKL VKDTGLQLKQ
301: VNNWFINQRK RNWHSTPSSS STQKSKRKSA GEKSRNDHFT

Best Arabidopsis Sequence Match ( AT5G25220.1 )
(BLAST)

001: MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKSN AGDNSGRERF A

Arabidopsis Description

KNAT3KNAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178U9D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.