Factsheet for GSMUA_Achr4P20400_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P26000_001	Banana	nucleus	77.6	80.76
GSMUA_Achr7P05170_001	Banana	nucleus	82.03	80.15
GSMUA_Achr3P13370_001	Banana	nucleus	73.44	78.99
GSMUA_Achr10P...	Banana	nucleus	70.31	68.88
KRH03552	Soybean	nucleus	61.72	68.7
KRH20116	Soybean	nucleus	61.72	68.5
KRH37876	Soybean	nucleus	63.8	66.4
KRH12889	Soybean	nucleus	63.28	65.68
Solyc12g010410.1.1	Tomato	nucleus	55.99	65.35
GSMUA_Achr5P04420_001	Banana	nucleus	42.19	64.54
VIT_11s0118g00800.t01	Wine grape	nucleus	70.83	63.26
PGSC0003DMT400020407	Potato	nucleus	55.73	62.94
GSMUA_Achr1P03660_001	Banana	nucleus	46.61	61.51
PGSC0003DMT400078990	Potato	nucleus	65.36	60.48
Solyc07g007120.2.1	Tomato	nucleus	66.41	59.16
GSMUA_Achr8P10550_001	Banana	nucleus	25.26	31.6
GSMUA_Achr2P00410_001	Banana	nucleus	24.48	30.82
GSMUA_Achr5P01960_001	Banana	nucleus	15.1	30.21
GSMUA_Achr4P28270_001	Banana	nucleus	21.09	29.89
GSMUA_Achr11P...	Banana	nucleus	23.96	29.87
GSMUA_Achr7P08050_001	Banana	nucleus	20.05	28.95
GSMUA_Achr10P...	Banana	nucleus	19.27	28.46
GSMUA_Achr7P27540_001	Banana	nucleus	24.74	27.14
GSMUA_Achr4P32230_001	Banana	nucleus	23.96	26.67
GSMUA_Achr4P03120_001	Banana	nucleus	20.05	26.55
GSMUA_Achr2P13200_001	Banana	nucleus	24.22	26.5
GSMUA_Achr3P26230_001	Banana	nucleus	21.35	25.47
GSMUA_Achr6P04640_001	Banana	nucleus	22.66	24.37
GSMUA_Achr4P14600_001	Banana	nucleus	23.44	23.2
GSMUA_Achr8P05110_001	Banana	nucleus	16.15	20.06

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.4	InterPro:ELK_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr4G20400_001
EnsemblPlants:GSMUA_Achr4P20400_001	EnsemblPlants:GSMUA_Achr4T20400_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
InterPro:IPR005539	InterPro:KNOX1	InterPro:KNOX2	UniProt:M0SQK3	PFAM:PF03789	PFAM:PF03790
PFAM:PF03791	PFAM:PF05920	PFscan:PS50071	PFscan:PS51213	PANTHER:PTHR11850	PANTHER:PTHR11850:SF122
SMART:SM00389	SMART:SM01188	SMART:SM01255	SMART:SM01256	SUPFAM:SSF46689	UniParc:UPI00029590A1
SEG:seg	:	:	:	:	:

Description

Homeobox protein knotted-1-like 3 [Source:GMGC_GENE;Acc:GSMUA_Achr4G20400_001]

Coordinates

chr4:-:21015363..21020266

Molecular Weight (calculated)

42311.7 Da

IEP (calculated)

5.559

GRAVY (calculated)

-0.524

Length

384 amino acids

Sequence
(BLAST)

001: MAFHNHLSHE LTLPQYAEEQ LGGDSPTVLM TTVGSGPTWL NSAILRRQGH HYADGSFLHL QTTVDSSSPP DEAPVSSDSV MVAAIPAGGE FVEAEALAQR
101: TGGEAAAGEG TWQSARYKAE ILAHPLYEQL LSAHVACVRI ATPVDQLPRI DAQLAQSQQV VSKYSVLGGG GSSGQILGDG KELDRFMTHY VLLLCSFKEQ
201: LQQHVRVHAM EAVMACWELE QALQSLTGVS PGEGTGATMS DDDDDDQVDS ETNLLDGSLG VPDSMGFGPL VPTDSERSLM ERVRQELKHE LKQGYKEKIV
301: DVREEILRKR RAGKLPGDST CTLKAWWQSH SKWPYPTEDD KAQLVEETGL QLKQINNWFI NQRKRNWHTN PSSSSSLKSK RKRQ

Best Arabidopsis Sequence Match ( AT5G25220.2 )
(BLAST)

001: MAFHHNHLSQ DLSFNHFTDQ HQPPPPQPPP PPPQQQQHFQ EAPPPNWLNT ALLRSSDNNN NFLNLHTATA NTTTASSSDS PSSAAAAAAA NQWLSRSSSF
101: LQRNNNNNAS IVGDGIDDVT GGADTMIQGE MKTGGGENKN DGGGATAADG VVSWQNARHK AEILSHPLYE QLLSAHVACL RIATPVDQLP RIDAQLAQSQ
201: HVVAKYSALG AAAQGLVGDD KELDQFMTHY VLLLCSFKEQ LQQHVRVHAM EAVMACWEIE QSLQSLTGVS PGEGMGATMS DDEDEQVESD ANMFDGGLDV
301: LGFGPLIPTE SERSLMERVR QELKHELKQG YKEKIVDIRE EILRKRRAGK LPGDTTSVLK AWWQSHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK
401: RNWHSNPSSS TVLKNKRKR

Arabidopsis Description

KNAT3KNAT3 [Source:UniProtKB/TrEMBL;Acc:A0A178U9D1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.