Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P10550_001 | Banana | nucleus | 80.0 | 79.48 |
| GSMUA_Achr11P... | Banana | nucleus | 77.7 | 76.95 |
| EES00633 | Sorghum | nucleus | 64.92 | 67.35 |
| TraesCS1D01G075700.1 | Wheat | nucleus | 65.57 | 65.36 |
| TraesCS1B01G091700.1 | Wheat | nucleus | 65.57 | 65.36 |
| Os01t0302500-01 | Rice | nucleus | 64.26 | 65.12 |
| TraesCS1A01G072800.1 | Wheat | nucleus | 65.25 | 65.03 |
| HORVU1Hr1G015720.1 | Barley | nucleus | 65.25 | 65.03 |
| Zm00001d040611_P002 | Maize | nucleus | 62.62 | 64.75 |
| EES18954 | Sorghum | nucleus | 64.26 | 64.69 |
| Zm00001d010948_P001 | Maize | nucleus | 64.92 | 64.5 |
| Zm00001d035439_P001 | Maize | nucleus | 62.95 | 64.43 |
| Os05t0129700-01 | Rice | nucleus | 65.25 | 63.99 |
| TraesCS1D01G075600.1 | Wheat | nucleus | 61.64 | 61.44 |
| TraesCS1B01G091600.1 | Wheat | nucleus | 60.66 | 60.26 |
| TraesCS1A01G072700.1 | Wheat | nucleus | 60.33 | 59.93 |
| VIT_14s0060g01180.t01 | Wine grape | nucleus | 60.66 | 59.68 |
| KRH33819 | Soybean | nucleus | 57.05 | 58.78 |
| KRG90534 | Soybean | nucleus | 57.05 | 56.68 |
| PGSC0003DMT400007159 | Potato | nucleus | 56.72 | 53.73 |
| KRG96717 | Soybean | nucleus | 54.43 | 53.38 |
| KRH68434 | Soybean | nucleus | 53.44 | 53.09 |
| Solyc01g100510.2.1 | Tomato | nucleus | 55.08 | 50.15 |
| GSMUA_Achr5P01960_001 | Banana | nucleus | 29.51 | 46.88 |
| GSMUA_Achr7P08050_001 | Banana | nucleus | 39.67 | 45.49 |
| GSMUA_Achr4P28270_001 | Banana | nucleus | 39.34 | 44.28 |
| GSMUA_Achr10P... | Banana | nucleus | 34.75 | 40.77 |
| GSMUA_Achr3P26230_001 | Banana | nucleus | 38.69 | 36.65 |
| GSMUA_Achr4P32230_001 | Banana | nucleus | 41.31 | 36.52 |
| GSMUA_Achr2P13200_001 | Banana | nucleus | 41.64 | 36.18 |
| GSMUA_Achr4P03120_001 | Banana | nucleus | 34.1 | 35.86 |
| GSMUA_Achr7P27540_001 | Banana | nucleus | 40.98 | 35.71 |
| GSMUA_Achr6P04640_001 | Banana | nucleus | 40.66 | 34.73 |
| GSMUA_Achr4P14600_001 | Banana | nucleus | 39.34 | 30.93 |
| GSMUA_Achr1P03660_001 | Banana | nucleus | 27.87 | 29.21 |
| GSMUA_Achr8P05110_001 | Banana | nucleus | 29.51 | 29.13 |
| GSMUA_Achr5P04420_001 | Banana | nucleus | 22.3 | 27.09 |
| GSMUA_Achr3P13370_001 | Banana | nucleus | 28.85 | 24.65 |
| GSMUA_Achr4P20400_001 | Banana | nucleus | 30.82 | 24.48 |
| GSMUA_Achr1P26000_001 | Banana | nucleus | 29.18 | 24.12 |
| GSMUA_Achr10P... | Banana | nucleus | 30.49 | 23.72 |
| GSMUA_Achr7P05170_001 | Banana | nucleus | 30.49 | 23.66 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | InterPro:ELK_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSMUA_Achr2G00410_001 | EnsemblPlants:GSMUA_Achr2P00410_001 | EnsemblPlants:GSMUA_Achr2T00410_001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_KN_domain |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR005539 | InterPro:KNOX1 | InterPro:KNOX2 | UniProt:M0S3Y2 |
| PFAM:PF03789 | PFAM:PF03790 | PFAM:PF03791 | PFAM:PF05920 | ScanProsite:PS00027 | PFscan:PS50071 |
| PFscan:PS51213 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF102 | SMART:SM00389 | SMART:SM01188 | SMART:SM01255 |
| SMART:SM01256 | SUPFAM:SSF46689 | UniParc:UPI00029536E4 | SEG:seg | : | : |
Description
Homeobox protein knotted-1-like 1 [Source:GMGC_GENE;Acc:GSMUA_Achr2G00410_001]
Coordinates
chr2:+:3085958..3092949
Molecular Weight (calculated)
33464.2 Da
IEP (calculated)
4.560
GRAVY (calculated)
-0.538
Length
305 amino acids
Sequence
(BLAST)
(BLAST)
001: MEDLYSIHPG ILRGGDIPVI GSVSSCQVTN EASQVIGGGG GSDLTDMIKA QIANHPLYPS LLSAYIECRK VGAPPEVAQL LEEIGSEGHS STGGGEIGAD
101: PELDEFMESY CLALVRYKED LSKPFDEAAS FLNDIEMQLT NLCKASSAAA TTTATGNSPS DEVIGTSEED QSCEDLESSE GQEYGSRVAD SDLREMLQKK
201: YSGYLSNLRK EFLKKRKKGK LPKDARLILL DWWNTHCRWP YPTEEEKAKL AEKTGLEQKQ INNWFINQRK RHWKPSEDVR FALMEGVSDG SSGTMLCFGS
301: STTGT
101: PELDEFMESY CLALVRYKED LSKPFDEAAS FLNDIEMQLT NLCKASSAAA TTTATGNSPS DEVIGTSEED QSCEDLESSE GQEYGSRVAD SDLREMLQKK
201: YSGYLSNLRK EFLKKRKKGK LPKDARLILL DWWNTHCRWP YPTEEEKAKL AEKTGLEQKQ INNWFINQRK RHWKPSEDVR FALMEGVSDG SSGTMLCFGS
301: STTGT
001: MDRMCGFRST EDYSEKATLM MPSDYQSLIC STTGDNQRLF GSDELATALS SELLPRIRKA EDNFSLSVIK SKIASHPLYP RLLQTYIDCQ KVGAPMEIAC
101: ILEEIQRENH VYKRDVAPLS CFGADPELDE FMETYCDILV KYKTDLARPF DEATTFINKI EMQLQNLCTG PASATALSDD GAVSSDEELR EDDDIAADDS
201: QQRSNDRDLK DQLLRKFGSH ISSLKLEFSK KKKKGKLPRE ARQALLDWWN VHNKWPYPTE GDKISLAEET GLDQKQINNW FINQRKRHWK PSENMPFDMM
301: DDSNETFFTE
101: ILEEIQRENH VYKRDVAPLS CFGADPELDE FMETYCDILV KYKTDLARPF DEATTFINKI EMQLQNLCTG PASATALSDD GAVSSDEELR EDDDIAADDS
201: QQRSNDRDLK DQLLRKFGSH ISSLKLEFSK KKKKGKLPRE ARQALLDWWN VHNKWPYPTE GDKISLAEET GLDQKQINNW FINQRKRHWK PSENMPFDMM
301: DDSNETFFTE
Arabidopsis Description
KNAT2KNOTTED-like from Arabidopsis thaliana 2 [Source:TAIR;Acc:AT1G70510]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.