Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P27540_001 | Banana | nucleus | 85.17 | 70.57 |
| CDY34012 | Canola | nucleus | 45.17 | 67.88 |
| GSMUA_Achr5P01960_001 | Banana | nucleus | 43.45 | 65.62 |
| GSMUA_Achr4P28270_001 | Banana | nucleus | 55.17 | 59.04 |
| GSMUA_Achr3P26230_001 | Banana | nucleus | 65.52 | 59.01 |
| GSMUA_Achr7P08050_001 | Banana | nucleus | 52.76 | 57.52 |
| GSMUA_Achr10P... | Banana | nucleus | 46.9 | 52.31 |
| Os03t0727000-02 | Rice | nucleus | 64.14 | 51.52 |
| TraesCS4D01G058000.1 | Wheat | nucleus | 63.45 | 50.83 |
| TraesCS4A01G256700.1 | Wheat | nucleus | 63.45 | 50.83 |
| TraesCS4B01G057900.1 | Wheat | nucleus | 63.45 | 50.69 |
| HORVU4Hr1G009730.1 | Barley | nucleus | 63.1 | 50.27 |
| Zm00001d033859_P002 | Maize | nucleus | 61.03 | 49.3 |
| Solyc04g077210.2.1 | Tomato | nucleus | 60.0 | 49.01 |
| VIT_18s0001g08380.t01 | Wine grape | nucleus | 62.41 | 48.92 |
| PGSC0003DMT400012712 | Potato | nucleus | 60.0 | 48.33 |
| EER90950 | Sorghum | nucleus | 60.0 | 48.33 |
| GSMUA_Achr2P13200_001 | Banana | nucleus | 57.59 | 47.58 |
| GSMUA_Achr4P32230_001 | Banana | nucleus | 55.52 | 46.67 |
| KRH61471 | Soybean | nucleus | 57.24 | 45.98 |
| GSMUA_Achr6P04640_001 | Banana | nucleus | 56.55 | 45.94 |
| KRH15482 | Soybean | nucleus | 60.34 | 45.45 |
| KRG88661 | Soybean | nucleus | 59.66 | 44.7 |
| Bra000638.1-P | Field mustard | nucleus | 56.21 | 42.12 |
| AT4G08150.1 | Thale cress | nucleus | 55.86 | 40.7 |
| CDX83145 | Canola | nucleus | 56.21 | 40.55 |
| GSMUA_Achr11P... | Banana | nucleus | 39.31 | 37.01 |
| GSMUA_Achr8P10550_001 | Banana | nucleus | 38.62 | 36.48 |
| GSMUA_Achr8P05110_001 | Banana | nucleus | 38.62 | 36.25 |
| GSMUA_Achr4P14600_001 | Banana | nucleus | 45.86 | 34.28 |
| GSMUA_Achr2P00410_001 | Banana | nucleus | 35.86 | 34.1 |
| CDY68624 | Canola | nucleus | 39.66 | 32.95 |
| GSMUA_Achr5P04420_001 | Banana | nucleus | 22.07 | 25.5 |
| GSMUA_Achr1P03660_001 | Banana | nucleus | 23.79 | 23.71 |
| GSMUA_Achr3P13370_001 | Banana | nucleus | 26.9 | 21.85 |
| GSMUA_Achr1P26000_001 | Banana | nucleus | 27.59 | 21.68 |
| GSMUA_Achr7P05170_001 | Banana | nucleus | 27.24 | 20.1 |
| GSMUA_Achr4P20400_001 | Banana | nucleus | 26.55 | 20.05 |
| GSMUA_Achr10P... | Banana | nucleus | 26.55 | 19.64 |
Protein Annotations
| Gene3D:1.10.10.60 | MapMan:15.5.3.4 | InterPro:ELK_dom | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0043565 |
| EnsemblPlantsGene:GSMUA_Achr4G03120_001 | EnsemblPlants:GSMUA_Achr4P03120_001 | EnsemblPlants:GSMUA_Achr4T03120_001 | InterPro:Homeobox-like_sf | InterPro:Homeobox_CS | InterPro:Homeobox_KN_domain |
| InterPro:Homeobox_dom | InterPro:IPR001356 | InterPro:IPR005539 | InterPro:KNOX1 | InterPro:KNOX2 | UniProt:M0SKM9 |
| PFAM:PF03789 | PFAM:PF03790 | PFAM:PF03791 | PFAM:PF05920 | ScanProsite:PS00027 | PFscan:PS50071 |
| PFscan:PS51213 | PANTHER:PTHR11850 | PANTHER:PTHR11850:SF203 | SMART:SM00389 | SMART:SM01188 | SMART:SM01256 |
| SUPFAM:SSF46689 | UniParc:UPI000296F089 | SEG:seg | : | : | : |
Description
Homeobox protein knotted-1-like 6 [Source:GMGC_GENE;Acc:GSMUA_Achr4G03120_001]
Coordinates
chr4:+:2520494..2524277
Molecular Weight (calculated)
32765.0 Da
IEP (calculated)
5.262
GRAVY (calculated)
-0.577
Length
290 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEFSQLGAN LWGGLMCTTS PAEKTAVDAA TVAMFGLPSG DAKGRCIPSP VGAPPEVVAR LSAVAQELEM RQRANFICRD SPTDPELDQF MEAYNEMLIK
101: YREELTRPLQ EAMEFLRMME SQLNSLALTT GSVRISSAAE KFGVCSSGDD QDGNTDNAEP PELVASAEDR ELKHHLLKKY SGYLSSLRQE LSKKKKKGKL
201: PKDARQQLLN WWELHYKWPY PSETQKVALA EATGLDLKQI NNWFINQRKR HWKPSEDMQF VVMDGYHAPN TALYMDGQYF MGDDLYRLGP
101: YREELTRPLQ EAMEFLRMME SQLNSLALTT GSVRISSAAE KFGVCSSGDD QDGNTDNAEP PELVASAEDR ELKHHLLKKY SGYLSSLRQE LSKKKKKGKL
201: PKDARQQLLN WWELHYKWPY PSETQKVALA EATGLDLKQI NNWFINQRKR HWKPSEDMQF VVMDGYHAPN TALYMDGQYF MGDDLYRLGP
001: MDGMYNFHSA GDYSDKSVLM MSPESLMFPS DYQALLCSSA GENRVSDVFG SDELLSVAVS ALSSEAASIA PEIRRNDDNV SLTVIKAKIA CHPSYPRLLQ
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE
101: AYIDCQKVGA PPEIACLLEE IQRESDVYKQ EVVPSSCFGA DPELDEFMET YCDILVKYKS DLARPFDEAT CFLNKIEMQL RNLCTGVESA RGVSEDGVIS
201: SDEELSGGDH EVAEDGRQRC EDRDLKDRLL RKFGSRISTL KLEFSKKKKK GKLPREARQA LLDWWNLHYK WPYPTEGDKI ALADATGLDQ KQINNWFINQ
301: RKRHWKPSEN MPFAMMDDSS GSFFTEE
Arabidopsis Description
KNAT6KNOTTED1-like homeobox gene 6 [Source:TAIR;Acc:AT1G23380]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.