Factsheet for GSMUA_Achr1P03680_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P03660_001
GSMUA_Achr1P09570_001
GSMUA_Achr1P19120_001
GSMUA_Achr2P09660_001
GSMUA_Achr2P13200_001
GSMUA_Achr3P09850_001
GSMUA_Achr3P12130_001
GSMUA_Achr3P13490_001
GSMUA_Achr3P26230_001
GSMUA_Achr4P03120_001
GSMUA_Achr4P28270_001
GSMUA_Achr4P32230_001
GSMUA_Achr5P01960_001
GSMUA_Achr6P04640_001
GSMUA_Achr6P31770_001
GSMUA_Achr7P08050_001
GSMUA_Achr7P27540_001
GSMUA_Achr9P05640_001
GSMUA_Achr9P09770_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G41410.1	GSMUA_Achr3P09850_001	AT1G06920.1	15781858
AT5G41410.1	GSMUA_Achr1P09570_001	AT1G26260.1	15781858
AT5G41410.1	GSMUA_Achr1P19120_001	AT1G26260.1	15781858
AT5G41410.1	GSMUA_Achr2P09660_001	AT1G26260.1	15781858
AT5G41410.1	GSMUA_Achr3P12130_001	AT1G26260.1	15781858
AT5G41410.1	GSMUA_Achr3P13490_001	AT1G26260.1	15781858
AT5G41410.1	GSMUA_Achr9P09770_001	AT1G26260.1	15781858
AT5G41410.1	GSMUA_Achr1P03660_001	AT1G62990.1	11701881
AT5G41410.1	GSMUA_Achr10P...	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr2P13200_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr3P26230_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr4P03120_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr4P28270_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr4P32230_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr5P01960_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr6P04640_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr7P08050_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr7P27540_001	AT4G08150.1	11701881
AT5G41410.1	GSMUA_Achr10P...	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr2P13200_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr3P26230_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr4P03120_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr4P28270_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr4P32230_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr5P01960_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr6P04640_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr7P08050_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr7P27540_001	AT4G08150.1	15781858
AT5G41410.1	GSMUA_Achr10P...	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr2P13200_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr3P26230_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr4P03120_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr4P28270_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr4P32230_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr5P01960_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr6P04640_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr7P08050_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr7P27540_001	AT4G08150.1	17873098
AT5G41410.1	GSMUA_Achr6P31770_001	AT4G18830.1	15781858
AT5G41410.1	GSMUA_Achr9P05640_001	AT4G18830.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P18740_001	Banana	nucleus	73.31	37.67
GSMUA_Achr4P04480_001	Banana	nucleus	45.27	31.83
GSMUA_Achr1P06400_001	Banana	nucleus	52.03	29.84
GSMUA_Achr1P26900_001	Banana	nucleus	37.5	27.89
GSMUA_Achr10P...	Banana	plastid	9.12	27.84
GSMUA_Achr2P04310_001	Banana	nucleus	52.36	27.78
GSMUA_Achr5P08840_001	Banana	nucleus	29.73	27.76
GSMUA_Achr5P03140_001	Banana	nucleus	7.09	27.27
KRH59951	Soybean	nucleus	57.43	26.77
VIT_02s0025g00200.t01	Wine grape	nucleus	57.77	26.47
KRH77572	Soybean	nucleus	57.77	26.47
GSMUA_Achr4P07450_001	Banana	nucleus	27.03	26.4
KRH27902	Soybean	nucleus	57.09	26.32
GSMUA_Achr10P...	Banana	nucleus	37.16	26.32
GSMUA_Achr4P14670_001	Banana	nucleus	26.35	26.26
CDY45383	Canola	nucleus	23.31	26.24
GSMUA_Achr2P06410_001	Banana	nucleus	12.84	26.21
KRH41225	Soybean	nucleus	57.09	26.16
GSMUA_Achr11P...	Banana	plastid	22.97	25.86
PGSC0003DMT400032122	Potato	nucleus	55.07	25.75
GSMUA_Achr1P23300_001	Banana	extracellular	36.82	25.23
Solyc08g081400.2.1	Tomato	nucleus	54.39	25.0
GSMUA_Achr3P29230_001	Banana	nucleus	37.84	24.78
GSMUA_Achr4P12180_001	Banana	nucleus	43.24	24.47
Bra025497.1-P	Field mustard	nucleus	48.31	24.11
CDY44476	Canola	nucleus	45.61	23.77
GSMUA_Achr5P03130_001	Banana	cytosol	26.35	23.35
AT5G41410.1	Thale cress	nucleus	47.3	22.91
GSMUA_Achr6P07130_001	Banana	nucleus	36.49	22.0
GSMUA_Achr9P21580_001	Banana	nucleus	38.51	20.88
GSMUA_Achr4P13590_001	Banana	nucleus	38.18	19.86
GSMUA_Achr4P06630_001	Banana	nucleus	37.5	19.61
GSMUA_Achr7P27440_001	Banana	nucleus	42.57	18.42
GSMUA_Achr2P06420_001	Banana	nucleus	22.64	18.16
GSMUA_Achr6P18180_001	Banana	nucleus	38.51	17.98
GSMUA_Achr7P14960_001	Banana	nucleus	25.34	17.05
GSMUA_Achr5P07020_001	Banana	nucleus	26.69	15.05
GSMUA_Achr2P19430_001	Banana	nucleus	25.68	14.05
GSMUA_Achr10P...	Banana	nucleus	35.47	13.93
GSMUA_AchrUn_...	Banana	nucleus	27.7	13.83
GSMUA_Achr4P02680_001	Banana	nucleus	23.99	12.26
GSMUA_Achr11P...	Banana	plastid	15.88	11.52
GSMUA_Achr10P...	Banana	nucleus	3.72	10.78

Protein Annotations

Gene3D:1.10.10.60	MapMan:15.5.3.5	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr1G03680_001
EnsemblPlants:GSMUA_Achr1P03680_001	EnsemblPlants:GSMUA_Achr1T03680_001	InterPro:Homeobox-like_sf	InterPro:Homeobox_KN_domain	InterPro:Homeobox_dom	InterPro:IPR001356
UniProt:M0RWS6	PFAM:PF05920	PFAM:PF07526	InterPro:POX_dom	PANTHER:PTHR11850	PANTHER:PTHR11850:SF66
SMART:SM00574	SUPFAM:SSF46689	UniParc:UPI00029571B2	SEG:seg	:	:

Description

Predicted protein [Source:GMGC_GENE;Acc:GSMUA_Achr1G03680_001]

Coordinates

chr1:+:3045051..3047905

Molecular Weight (calculated)

33090.1 Da

IEP (calculated)

9.105

GRAVY (calculated)

-0.573

Length

296 amino acids

Sequence
(BLAST)

001: MLVDESSARF LFPSCQGNGQ SSSGLSLSLN HAETSNSGYD QPPFDHHGLT SSRDTQLLQK PADHHLQDGR FFQSSTSQSA LINPYQQSQQ PLKSTKYLIP
101: ARELLNEFCS LETAVIGSSK DKASKTKPWE EGGTSSSSIS FNQSLYSLDI HELQGRKAKL LSMLEEVDKR YRRYREQMRA VVLSFEAVAG EGAATVYSAL
201: AAKVMSRHFR CLRDGIVGQI DAIKKAMGEK DAQRAFQQAG MMESHPWRPQ RGLPERSVSI LRAWLFEHFL HPYPSDVDKH ILARQTGLSR SQACKP

Best Arabidopsis Sequence Match ( AT4G36870.1 )
(BLAST)

001: MGITKTSPNT TILLKTFHNN SMSQDYHHHH HHNQHQGGIF NFSNGFDRSD SPNLTTQQKQ EHQRVEMDEE SSVAGGRIPV YESAGMLSEM FNFPGSSGGG
101: RDLDLGQSFR SNRQLLEEQH QNIPAMNATD SATATAAAMQ LFLMNPPPPQ QPPSPSSTTS PRSHHNSSTL HMLLPSPSTN TTHHQNYTNH MSMHQLPHQH
201: HQQISTWQSS PDHHHHHHNS QTEIGTVHVE NSGGHGGQGL SLSLSSSLEA AAKAEEYRNI YYGANSSNAS PHHQYNQFKT LLANSSQHHH QVLNQFRSSP
301: AASSSSMAAV NILRNSRYTT AAQELLEEFC SVGRGFLKKN KLGNSSNPNT CGGDGGGSSP SSAGANKEHP PLSASDRIEH QRRKVKLLTM LEEVDRRYNH
401: YCEQMQMVVN SFDIVMGHGA ALPYTALAQK AMSRHFRCLK DAVAAQLKQS CELLGDKDAA GISSSGLTKG ETPRLRLLEQ SLRQNRAFHQ MGMMEQEAWR
501: PQRGLPERSV NILRAWLFEH FLHPYPSDAD KHLLARQTGL SRNQVSNWFI NARVRLWKPM VEEMYQQESK EREREEELEE NEEDQETKNS NDDKSTKSNN
601: NESNFTAVRT TSQTPTTTAP DASDADAAVA TGHRLRSNIN AYENDASSLL LPSSYSNAAA PAAVSDDLNS RYGGSDAFSA VATCQQSVGG FDDADMDGVN
701: VIRFGTNPTG DVSLTLGLRH AGNMPDKDAS FCVREFGGF

Arabidopsis Description

BLH2BEL1-like homeodomain protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SW80]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.