Factsheet for GSMUA_Achr3P12130_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 23955147

gfp PMID: 23955147 doi

HH Peng, W Shan, JF Kuang, WJ Lu, JY Chen

State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources/Guangdong Key Laboratory for Postharvest Science, College of Horticultural Science, South China Agricultural University, Guangzhou, 510642, People's Republic of China.

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr1P03680_001
GSMUA_Achr1P06400_001
GSMUA_Achr2P04310_001
GSMUA_Achr4P02680_001
GSMUA_Achr4P04480_001
GSMUA_Achr4P12180_001
GSMUA_Achr5P07020_001
GSMUA_Achr7P14960_001
GSMUA_Achr9P18740_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26260.1	GSMUA_Achr4P02680_001	AT4G32980.1	15781858
AT1G26260.1	GSMUA_Achr10P...	AT5G02030.1	15781858
AT1G26260.1	GSMUA_Achr10P...	AT5G02030.1	15781858
AT1G26260.1	GSMUA_Achr5P07020_001	AT5G02030.1	15781858
AT1G26260.1	GSMUA_Achr7P14960_001	AT5G02030.1	15781858
AT1G26260.1	GSMUA_Achr1P03680_001	AT5G41410.1	15781858
AT1G26260.1	GSMUA_Achr1P06400_001	AT5G41410.1	15781858
AT1G26260.1	GSMUA_Achr2P04310_001	AT5G41410.1	15781858
AT1G26260.1	GSMUA_Achr4P04480_001	AT5G41410.1	15781858
AT1G26260.1	GSMUA_Achr4P12180_001	AT5G41410.1	15781858
AT1G26260.1	GSMUA_Achr9P18740_001	AT5G41410.1	15781858

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P19120_001	Banana	nucleus	62.99	55.94
GSMUA_Achr8P09170_001	Banana	nucleus	16.01	50.41
GSMUA_Achr3P13490_001	Banana	nucleus	56.43	49.31
GSMUA_Achr6P36210_001	Banana	nucleus	33.86	46.91
GSMUA_Achr9P28060_001	Banana	nucleus	36.48	45.42
GSMUA_Achr9P18510_001	Banana	nucleus	36.48	44.55
GSMUA_Achr6P16480_001	Banana	nucleus	18.64	43.29
GSMUA_Achr1P09570_001	Banana	nucleus	36.75	40.35
GSMUA_Achr10P...	Banana	nucleus	19.16	39.67
GSMUA_Achr1P27010_001	Banana	nucleus	22.83	38.5
GSMUA_Achr5P24960_001	Banana	nucleus	18.37	38.04
GSMUA_Achr3P10600_001	Banana	nucleus	44.62	36.88
GSMUA_Achr8P24490_001	Banana	nucleus	39.11	35.99
GSMUA_AchrUn_...	Banana	nucleus	25.46	34.28
GSMUA_AchrUn_...	Banana	nucleus	21.52	33.88
GSMUA_Achr9P11020_001	Banana	nucleus	22.83	33.72
GSMUA_Achr2P09660_001	Banana	nucleus	25.98	31.23
AT1G26260.1	Thale cress	nucleus	30.97	30.26
GSMUA_Achr10P...	Banana	nucleus	21.78	29.96
GSMUA_Achr9P07330_001	Banana	nucleus	27.82	29.28
GSMUA_Achr9P01040_001	Banana	nucleus	20.47	27.66
GSMUA_Achr6P09050_001	Banana	nucleus	22.57	27.22
GSMUA_Achr9P09770_001	Banana	nucleus	21.78	26.02
GSMUA_Achr7P01750_001	Banana	nucleus	22.31	25.3
GSMUA_Achr1P19610_001	Banana	nucleus	24.15	25.21
GSMUA_Achr7P06330_001	Banana	nucleus	23.88	24.86
GSMUA_Achr4P17570_001	Banana	golgi, vacuole	23.62	24.52
GSMUA_Achr3P02490_001	Banana	nucleus	26.77	24.17
GSMUA_Achr9P22300_001	Banana	nucleus	18.37	24.14
GSMUA_Achr2P21280_001	Banana	nucleus	31.76	24.06
GSMUA_Achr4P19330_001	Banana	nucleus	24.15	23.77
GSMUA_Achr6P27780_001	Banana	nucleus	32.55	23.75
GSMUA_Achr10P...	Banana	nucleus	24.67	23.38
GSMUA_Achr2P21460_001	Banana	nucleus	23.62	23.26
GSMUA_Achr2P06090_001	Banana	nucleus	27.03	21.55
GSMUA_Achr10P...	Banana	nucleus	23.88	21.51
GSMUA_Achr7P22770_001	Banana	nucleus	23.62	20.36
GSMUA_Achr4P16120_001	Banana	nucleus	22.57	18.82
GSMUA_Achr3P17290_001	Banana	plastid	28.08	18.77
GSMUA_Achr7P02770_001	Banana	nucleus	23.88	18.65
GSMUA_Achr10P...	Banana	mitochondrion	30.97	17.93

Protein Annotations

EnsemblPlants:GSMUA_Achr3P12130_001	EnsemblPlants:GSMUA_Achr3T12130_001	EnsemblPlantsGene:GSMUA_Achr3G12130_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI00029629E7	UniProt:M0SDY0	MapMan:15.5.32	MapMan:26.1.2.1.2	:

Description

Putative Transcription factor bHLH49 [Source:GMGC_GENE;Acc:GSMUA_Achr3G12130_001]

Coordinates

chr3:-:8992661..8995975

Molecular Weight (calculated)

41395.8 Da

IEP (calculated)

9.438

GRAVY (calculated)

-0.625

Length

381 amino acids

Sequence
(BLAST)

001: MLPSPPPGEF PHSLPHFPVD SGLIERAARL SCFGGGGSFR GISLLGPSQS MTPPSGASKD AIGARVQKAE LNVVSLPVEH GTIKGITMNN KRDRSISQVG
101: TSNNKSREGN FCEEGQERHT GSADAAGNSS SSDLGANKRR KATEETEKEK DQVLRGLQSS TETTKDNTET KFKSYKHSGK NAKDNSEAAK EGYVHVRAQR
201: GQATNSHSLA ERVRREKISE RMKYLQELVP GCSKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLAAVNPQL DFSIEGLLAK NLLHSHGGSS SAAGFSQEMI
301: YPQVYSSQQG LAHAGISSML NPSDAFRRTL ITEIPMASGY KETSLQMHNS WNEQLVMQMA YGANPPLNSQ AINRKPDGFT I

Best Arabidopsis Sequence Match ( AT1G68920.1 )
(BLAST)

001: MDLSAKDEFS AEKRNPDNYD SVNNPSGDWR VDSYPSENLI SAGPASCSPS QMMDSFGQTL WYDPTSVQAV GYAGFNGGNA SSSSFRGSID RSLEMGWNLP
101: NLLPPKGNGL FLPNASSFLP PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNSEA IGLFLQGGGT MQGQCQSNEL NVGEPHNDVS VAVKESTVRS
201: SEQAKPNVPG SGNVSEDTQS SGGNGQKGRE TSSNTKKRKR NGQKNSEAAQ SHRSQQSEEE PDNNGDEKRN DEQSPNSPGK KSNSGKQQGK QSSDPPKDGY
301: IHVRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCN KVTGKAVMLD EIINYVQSLQ RQVEFLSMKL ATVNPQMDFN LEGLLAKDAL QLRAGSSSTT
401: PFPPNMSMAY PPLPHGFMQQ TLSSIGRTIT SPLSPMNGGF KRQETNGWEG DLQNVIHINY GAGDVTPDPQ AAATASLPAA NMKVEP

Arabidopsis Description

BHLH49Transcription factor bHLH49 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.