Factsheet for GSMUA_Achr6P27780_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P02490_001	Banana	nucleus	49.04	60.66
GSMUA_Achr8P09170_001	Banana	nucleus	13.22	57.02
GSMUA_Achr9P07330_001	Banana	nucleus	38.31	55.25
GSMUA_Achr2P21280_001	Banana	nucleus	52.68	54.67
GSMUA_Achr2P06090_001	Banana	nucleus	49.23	53.77
GSMUA_Achr6P16480_001	Banana	nucleus	14.94	47.56
GSMUA_Achr5P24960_001	Banana	nucleus	15.52	44.02
GSMUA_Achr1P27010_001	Banana	nucleus	18.2	42.04
GSMUA_Achr10P...	Banana	nucleus	14.75	41.85
Solyc09g057710.2.1	Tomato	nucleus	37.55	41.35
PGSC0003DMT400053639	Potato	nucleus	38.89	41.26
GSMUA_Achr9P11020_001	Banana	nucleus	20.31	41.09
GSMUA_AchrUn_...	Banana	nucleus	18.77	40.5
GSMUA_Achr6P36210_001	Banana	nucleus	20.69	39.27
GSMUA_AchrUn_...	Banana	nucleus	20.88	38.52
GSMUA_Achr10P...	Banana	nucleus	20.11	37.91
GSMUA_Achr3P17290_001	Banana	plastid	40.42	37.02
GSMUA_Achr10P...	Banana	mitochondrion	46.36	36.78
GSMUA_Achr9P01040_001	Banana	nucleus	18.97	35.11
GSMUA_Achr9P28060_001	Banana	nucleus	20.11	34.31
GSMUA_Achr6P09050_001	Banana	nucleus	20.69	34.18
GSMUA_Achr8P24490_001	Banana	nucleus	26.82	33.82
GSMUA_Achr2P09660_001	Banana	nucleus	20.11	33.12
GSMUA_Achr3P12130_001	Banana	nucleus	23.75	32.55
GSMUA_Achr7P01750_001	Banana	nucleus	20.88	32.44
GSMUA_Achr9P18510_001	Banana	nucleus	19.35	32.37
GSMUA_Achr1P19610_001	Banana	nucleus	22.61	32.33
GSMUA_Achr1P09570_001	Banana	nucleus	20.88	31.41
GSMUA_Achr4P17570_001	Banana	golgi, vacuole	21.84	31.06
GSMUA_Achr4P19330_001	Banana	nucleus	22.22	29.97
GSMUA_Achr7P22770_001	Banana	nucleus	25.29	29.86
GSMUA_Achr10P...	Banana	nucleus	23.95	29.55
GSMUA_Achr9P09770_001	Banana	nucleus	18.01	29.47
GSMUA_Achr1P19120_001	Banana	nucleus	24.14	29.37
GSMUA_Achr3P13490_001	Banana	nucleus	24.52	29.36
GSMUA_Achr7P06330_001	Banana	nucleus	20.31	28.96
GSMUA_Achr10P...	Banana	nucleus	22.03	28.61
GSMUA_Achr3P10600_001	Banana	nucleus	24.14	27.33
GSMUA_Achr9P22300_001	Banana	nucleus	14.94	26.9
GSMUA_Achr4P16120_001	Banana	nucleus	22.22	25.38
GSMUA_Achr7P02770_001	Banana	nucleus	23.37	25.0
GSMUA_Achr2P21460_001	Banana	nucleus	18.2	24.55

Protein Annotations

EnsemblPlants:GSMUA_Achr6P27780_001	EnsemblPlants:GSMUA_Achr6T27780_001	EnsemblPlantsGene:GSMUA_Achr6G27780_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF169	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI00029682F0	UniProt:M0TAS3	MapMan:15.5.32	MapMan:26.1.2.1.2	:

Description

Putative Transcription factor bHLH62 [Source:GMGC_GENE;Acc:GSMUA_Achr6G27780_001]

Coordinates

chr6:+:28188706..28196555

Molecular Weight (calculated)

56383.4 Da

IEP (calculated)

6.330

GRAVY (calculated)

-0.549

Length

522 amino acids

Sequence
(BLAST)

001: MEKERFFGVN WQSMDAGMPP EMNSRAAAAD QLPNSFLNLG WEQPMHHDAH FESALSSLVS SPSSNTPAGN DSVIIGELIG RLGSICNSGE VSPPSRYQSA
101: NTSCYSTPLN SPPKLNLSGM DHQQQGRGGV PVPGNQMAAG KFSPFAADPG FAERAARFSC FGARGYAGLG GQFGLPEAGK LSRFGGEAEF GNSQEASSVS
201: DRTTAVGAEN NARKRKAASK GKAKGAPLSS SNMNPPKPSD GENSDAKRCK PAETDGADKD AAVKPKTEEN GDVGRKQGEE GNAKPPEPPK DYIHVRARRG
301: QATDSHSLAE RVRREKISER MKLLQDLVPG CNKVTGKALM LDEIINYVQS LQRQVEFLSM KLAALNPQLD FNMEALLPKD MHQVLGQLPQ QVYPLDMAST
401: AFSYAQQPQG TPLQSIVTNS LDVQGSLNPL ESSLRRPPTM QLPRLDGFTD ATSQLGNLWE DDLQYVVQMG LGQSQGTAFS SQTMPVDLNL RDFTLKGLSN
501: NYIAFLFMFI LLDLPHPQSY GT

Best Arabidopsis Sequence Match ( AT3G07340.1 )
(BLAST)

001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL

Arabidopsis Description

BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.