Factsheet for GSMUA_Achr3P17290_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P09170_001	Banana	nucleus	11.93	56.2
GSMUA_Achr6P16480_001	Banana	nucleus	14.04	48.78
GSMUA_Achr9P07330_001	Banana	nucleus	27.54	43.37
GSMUA_Achr5P24960_001	Banana	nucleus	13.68	42.39
GSMUA_Achr1P27010_001	Banana	nucleus	16.32	41.15
GSMUA_Achr6P27780_001	Banana	nucleus	37.02	40.42
GSMUA_Achr10P...	Banana	nucleus	12.81	39.67
GSMUA_Achr3P02490_001	Banana	nucleus	29.3	39.57
GSMUA_Achr2P06090_001	Banana	nucleus	32.98	39.33
GSMUA_AchrUn_...	Banana	nucleus	19.12	38.52
GSMUA_AchrUn_...	Banana	nucleus	15.96	37.6
GSMUA_Achr9P11020_001	Banana	nucleus	16.14	35.66
GSMUA_Achr2P21280_001	Banana	nucleus	31.4	35.59
Solyc09g057710.2.1	Tomato	nucleus	29.47	35.44
PGSC0003DMT400053639	Potato	nucleus	30.18	34.96
GSMUA_Achr10P...	Banana	nucleus	16.67	34.3
GSMUA_Achr9P01040_001	Banana	nucleus	16.84	34.04
GSMUA_Achr6P36210_001	Banana	nucleus	16.32	33.82
GSMUA_Achr6P09050_001	Banana	nucleus	17.54	31.65
GSMUA_Achr1P19610_001	Banana	nucleus	20.0	31.23
GSMUA_Achr7P01750_001	Banana	nucleus	18.07	30.65
GSMUA_Achr8P24490_001	Banana	nucleus	21.75	29.95
GSMUA_Achr9P28060_001	Banana	nucleus	15.96	29.74
GSMUA_Achr4P19330_001	Banana	nucleus	20.18	29.72
GSMUA_Achr1P09570_001	Banana	nucleus	18.07	29.68
GSMUA_Achr2P09660_001	Banana	nucleus	16.32	29.34
GSMUA_Achr9P18510_001	Banana	nucleus	15.79	28.85
GSMUA_Achr7P06330_001	Banana	nucleus	18.42	28.69
GSMUA_Achr9P09770_001	Banana	nucleus	15.96	28.53
GSMUA_Achr3P12130_001	Banana	nucleus	18.77	28.08
GSMUA_Achr4P17570_001	Banana	golgi, vacuole	17.72	27.52
GSMUA_Achr7P22770_001	Banana	nucleus	21.05	27.15
GSMUA_Achr10P...	Banana	nucleus	20.0	26.95
GSMUA_Achr1P19120_001	Banana	nucleus	20.18	26.81
GSMUA_Achr10P...	Banana	nucleus	18.6	26.37
GSMUA_Achr9P22300_001	Banana	nucleus	12.98	25.52
GSMUA_Achr3P13490_001	Banana	nucleus	19.47	25.46
GSMUA_Achr3P10600_001	Banana	nucleus	20.35	25.16
GSMUA_Achr10P...	Banana	mitochondrion	28.77	24.92
GSMUA_Achr7P02770_001	Banana	nucleus	21.23	24.8
GSMUA_Achr4P16120_001	Banana	nucleus	19.65	24.51
GSMUA_Achr2P21460_001	Banana	nucleus	15.96	23.51

Protein Annotations

EnsemblPlants:GSMUA_Achr3P17290_001	EnsemblPlants:GSMUA_Achr3T17290_001	EnsemblPlantsGene:GSMUA_Achr3G17290_001	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI00029552BE	UniProt:M0SFE5	MapMan:15.5.32	MapMan:26.1.2.1.2	:

Description

Putative Transcription factor bHLH62 [Source:GMGC_GENE;Acc:GSMUA_Achr3G17290_001]

Coordinates

chr3:-:18581644..18583919

Molecular Weight (calculated)

61104.9 Da

IEP (calculated)

8.554

GRAVY (calculated)

-0.569

Length

570 amino acids

Sequence
(BLAST)

001: MAPPSLASKA PHSLTANCGD PILAFRPHLS LSLSIYTRRS TPPSFRPSSL SLSSSSPPSF RKNTSFPHFS RSLPQFPPAG MEKERFLSVD CKSPDMNSGA
101: VAEQLPRPFL DLGWEQPVHH DAQFESAISS FVSSPSSNPS AGNGSVVVRA LIGRFGSICD SGEISQTSCY STPLDSPPKL TLPVLGHLQQ GGGGLPMPGT
201: MADGQFTPLA ANPGFTERAA RSSCFGAWSY GGLGDQSGLP VARNLSRAPS SHSLKSAGAL QMGVPDNGKD ASKSNPERME MEMRSKLGGG MPPSSTSGRT
301: MAGGAANNVS KRKAASKGRR KEAPLSSSNV NSPTAAEDEH PDAKRCKSAK NNGADEDSVV KQETEQNIGA SQKKGKENNA KPPEPPKDYI HVRARRGQAT
401: DSHSLAERVR REKISKRMKL LQDLVPGCNK ITGKAMMLDE IINYVQSLQR QVEFLSMKLA TINPQLDFDL ETLLQENMHQ EHEPLPQQVY PLEGTSTAFS
501: YAQRPQGSPL QSAITNGLGV GQQPQCPIDG LADATSQLGN FWESDLQYVV QLGFGQSQGA EFFSRSLNAE

Best Arabidopsis Sequence Match ( AT3G07340.1 )
(BLAST)

001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL

Arabidopsis Description

BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.