Factsheet for GSMUA_Achr10P17130_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 5
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P21280_001	Banana	nucleus	43.16	56.46
GSMUA_Achr3P02490_001	Banana	nucleus	35.26	54.98
GSMUA_Achr8P09170_001	Banana	nucleus	9.73	52.89
GSMUA_Achr6P27780_001	Banana	nucleus	36.78	46.36
GSMUA_Achr6P16480_001	Banana	nucleus	11.25	45.12
GSMUA_Achr5P24960_001	Banana	nucleus	11.55	41.3
GSMUA_Achr9P07330_001	Banana	nucleus	22.64	41.16
GSMUA_Achr1P27010_001	Banana	nucleus	13.83	40.27
GSMUA_Achr10P...	Banana	nucleus	10.94	39.13
GSMUA_Achr6P36210_001	Banana	nucleus	15.65	37.45
GSMUA_Achr2P06090_001	Banana	nucleus	27.05	37.24
GSMUA_Achr9P11020_001	Banana	nucleus	14.44	36.82
GSMUA_AchrUn_...	Banana	nucleus	13.22	35.95
GSMUA_AchrUn_...	Banana	nucleus	15.35	35.69
PGSC0003DMT400053639	Potato	nucleus	25.38	33.94
Solyc09g057710.2.1	Tomato	nucleus	24.32	33.76
GSMUA_Achr6P09050_001	Banana	nucleus	15.65	32.59
GSMUA_Achr2P09660_001	Banana	nucleus	15.2	31.55
GSMUA_Achr10P...	Banana	nucleus	13.22	31.41
GSMUA_Achr3P12130_001	Banana	nucleus	17.93	30.97
GSMUA_Achr4P17570_001	Banana	golgi, vacuole	17.17	30.79
GSMUA_Achr9P18510_001	Banana	nucleus	14.59	30.77
GSMUA_Achr9P28060_001	Banana	nucleus	14.29	30.72
GSMUA_Achr8P24490_001	Banana	nucleus	19.0	30.19
GSMUA_Achr7P01750_001	Banana	nucleus	15.35	30.06
GSMUA_Achr1P09570_001	Banana	nucleus	15.5	29.39
GSMUA_Achr10P...	Banana	nucleus	17.93	29.35
GSMUA_Achr3P17290_001	Banana	plastid	24.92	28.77
GSMUA_Achr10P...	Banana	nucleus	18.39	28.61
GSMUA_Achr7P22770_001	Banana	nucleus	19.0	28.28
GSMUA_Achr1P19120_001	Banana	nucleus	18.24	27.97
GSMUA_Achr1P19610_001	Banana	nucleus	15.35	27.67
GSMUA_Achr9P01040_001	Banana	nucleus	11.85	27.66
GSMUA_Achr9P09770_001	Banana	nucleus	12.92	26.65
GSMUA_Achr3P13490_001	Banana	nucleus	17.17	25.92
GSMUA_Achr7P06330_001	Banana	nucleus	13.98	25.14
GSMUA_Achr4P19330_001	Banana	nucleus	14.74	25.06
GSMUA_Achr4P16120_001	Banana	nucleus	17.33	24.95
GSMUA_Achr7P02770_001	Banana	nucleus	18.24	24.59
GSMUA_Achr9P22300_001	Banana	nucleus	10.33	23.45
GSMUA_Achr3P10600_001	Banana	nucleus	15.96	22.78
GSMUA_Achr2P21460_001	Banana	nucleus	12.61	21.45

Protein Annotations

Gene3D:1.10.287.110	MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	InterPro:DnaJ_domain	InterPro:DnaJ_domain_CS
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	EnsemblPlantsGene:GSMUA_Achr10G17130_001	EnsemblPlants:GSMUA_Achr10P17130_001
EnsemblPlants:GSMUA_Achr10T17130_001	InterPro:HLH_DNA-bd_sf	InterPro:IPR001623	InterPro:IPR011598	InterPro:IPR036638	InterPro:IPR036869
InterPro:J_dom_sf	UniProt:M0RIY8	PFAM:PF00010	PFAM:PF00226	PRINTS:PR00625	ScanProsite:PS00636
PFscan:PS50076	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	SMART:SM00271	SMART:SM00353
SUPFAM:SSF46565	SUPFAM:SSF47459	UniParc:UPI00029536F6	InterPro:bHLH_dom	SEG:seg	:

Description

BHLH transcription factor, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G17130_001]

Coordinates

chr10:-:24455729..24464607

Molecular Weight (calculated)

73072.0 Da

IEP (calculated)

10.064

GRAVY (calculated)

-0.800

Length

658 amino acids

Sequence
(BLAST)

001: MTAGLVVYRN RTYLSPTTTR VGGGGGGGRV RFGRVQLQWS GGGWPSLRLS TFRPRAAVEE GFVRENAGSF YDLLGVPASG STSAIKKAYK QLARKYHPDV
101: SPPERAAEYT RRFIEVHEAY ETLSDPGRRA IYDRDLTRSL PLAFSASRCR FDEEPEERSG WRNHWQDQLT ELKRRSMNGS SKDNLSWGAQ MRRRRAEEER
201: SDSDLGSSSK SLVDLIKRWR RRGMDVQKAR FQSCQMRILF CFHRWHVVLS TKTQRVADAS CYGTPLNSPP KLNLSVIDHR QQGRGGPPMP VNRVPGPHLG
301: PLSAEPGFED GAARLSCFAG RSSGIGQSRS ERPAHLETEM RSTIGGSSTA EESELGNGPE ESSLSHRMTA EASSLRGIAD NNSGKWKTAA KRKGREAPLS
401: SSATNPPANM TEEENSDAKR CKSADRNGGA KNAAVKPKTE QNGDPGHREG KDNDHKPPEP PKDYIHVRAR RGQATDAHSL AERVRREKIS KRMKFLQDLV
501: PGCNKVTGKA VMLDEIINYV QSLQRQVEFL SMKLTTLNPQ MDVSMENFLP KDMYQSRGLM PQPVYPAEIG TVLSYAHQPQ TIALQSVMTS GLEAQFSLNS
601: LQSSLRQSQS MQHATTDAYT DAPSQLGGLW EDDLQSVAQT GFGQNHGQTH TSRMKIEL

Best Arabidopsis Sequence Match ( AT3G07340.1 )
(BLAST)

001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL

Arabidopsis Description

BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.