Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr5P18570_001 | nucleus |
| GSMUA_AchrUn_... | nucleus |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34530.1 | GSMUA_Achr5P18570_001 | AT1G04400.1 | 22739826 |
| AT4G34530.1 | GSMUA_AchrUn_... | AT1G04400.1 | 22739826 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P09050_001 | Banana | nucleus | 56.72 | 72.15 |
| GSMUA_Achr8P09170_001 | Banana | nucleus | 16.17 | 53.72 |
| GSMUA_Achr6P16480_001 | Banana | nucleus | 18.66 | 45.73 |
| GSMUA_Achr10P... | Banana | nucleus | 18.41 | 40.22 |
| TraesCS6B01G300400.1 | Wheat | nucleus | 35.07 | 40.17 |
| TraesCS6A01G273000.2 | Wheat | nucleus | 35.07 | 39.06 |
| TraesCS6D01G253000.1 | Wheat | nucleus | 34.33 | 38.98 |
| GSMUA_Achr5P24960_001 | Banana | nucleus | 17.41 | 38.04 |
| Os02t0705500-01 | Rice | nucleus | 34.08 | 37.95 |
| EES05656 | Sorghum | nucleus | 33.58 | 37.6 |
| Zm00001d051569_P001 | Maize | nucleus | 31.84 | 37.43 |
| HORVU6Hr1G068980.2 | Barley | nucleus | 35.32 | 36.79 |
| Zm00001d017778_P001 | Maize | nucleus | 34.08 | 35.68 |
| GSMUA_Achr1P27010_001 | Banana | nucleus | 19.65 | 34.96 |
| GSMUA_Achr6P36210_001 | Banana | nucleus | 23.63 | 34.55 |
| CDX76288 | Canola | nucleus | 20.9 | 33.6 |
| GSMUA_AchrUn_... | Banana | nucleus | 20.15 | 33.47 |
| PGSC0003DMT400058169 | Potato | nucleus | 22.14 | 33.21 |
| Solyc03g034000.2.1 | Tomato | nucleus | 21.39 | 32.33 |
| GSMUA_Achr9P11020_001 | Banana | nucleus | 20.65 | 32.17 |
| GSMUA_Achr2P09660_001 | Banana | nucleus | 25.12 | 31.86 |
| Bra034636.1-P | Field mustard | nucleus | 21.89 | 31.32 |
| GSMUA_AchrUn_... | Banana | nucleus | 21.89 | 31.1 |
| CDY17466 | Canola | nucleus | 21.14 | 30.58 |
| AT4G34530.1 | Thale cress | nucleus | 25.37 | 30.45 |
| Solyc02g062690.2.1 | Tomato | mitochondrion, nucleus | 22.89 | 30.16 |
| PGSC0003DMT400040021 | Potato | nucleus | 22.64 | 30.03 |
| GSMUA_Achr10P... | Banana | nucleus | 20.65 | 29.96 |
| Bra011540.1-P | Field mustard | nucleus | 24.13 | 29.57 |
| CDX75440 | Canola | nucleus | 24.13 | 29.48 |
| GSMUA_Achr9P18510_001 | Banana | nucleus | 22.64 | 29.17 |
| KRH51523 | Soybean | nucleus | 27.61 | 28.46 |
| GSMUA_Achr9P28060_001 | Banana | nucleus | 21.39 | 28.1 |
| CDX69067 | Canola | nucleus | 23.63 | 27.94 |
| KRH29448 | Soybean | nucleus | 29.1 | 27.79 |
| GSMUA_Achr7P01750_001 | Banana | nucleus | 23.13 | 27.68 |
| GSMUA_Achr9P01040_001 | Banana | nucleus | 19.4 | 27.66 |
| KRH24463 | Soybean | nucleus | 27.61 | 27.48 |
| VIT_04s0023g01930.t01 | Wine grape | nucleus | 24.13 | 26.5 |
| VIT_03s0038g04760.t01 | Wine grape | nucleus | 29.85 | 26.49 |
| GSMUA_Achr4P17570_001 | Banana | golgi, vacuole | 23.88 | 26.16 |
| Solyc01g109700.2.1 | Tomato | nucleus | 28.11 | 26.04 |
| PGSC0003DMT400001888 | Potato | nucleus | 28.61 | 26.02 |
| GSMUA_Achr9P07330_001 | Banana | nucleus | 23.13 | 25.69 |
| KRH60839 | Soybean | nucleus | 27.36 | 25.58 |
| GSMUA_Achr9P22300_001 | Banana | nucleus | 18.16 | 25.17 |
| GSMUA_Achr3P12130_001 | Banana | nucleus | 23.38 | 24.67 |
| GSMUA_Achr1P19610_001 | Banana | nucleus | 22.14 | 24.38 |
| GSMUA_Achr3P02490_001 | Banana | nucleus | 25.12 | 23.93 |
| GSMUA_Achr1P09570_001 | Banana | nucleus | 20.65 | 23.92 |
| GSMUA_Achr8P24490_001 | Banana | nucleus | 24.63 | 23.91 |
| GSMUA_Achr9P09770_001 | Banana | nucleus | 18.66 | 23.51 |
| GSMUA_Achr7P06330_001 | Banana | nucleus | 21.39 | 23.5 |
| GSMUA_Achr4P19330_001 | Banana | nucleus | 22.14 | 23.0 |
| GSMUA_Achr2P21460_001 | Banana | nucleus | 21.39 | 22.22 |
| GSMUA_Achr6P27780_001 | Banana | nucleus | 28.61 | 22.03 |
| GSMUA_Achr2P06090_001 | Banana | nucleus | 26.12 | 21.97 |
| GSMUA_Achr10P... | Banana | nucleus | 22.64 | 21.51 |
| GSMUA_Achr7P22770_001 | Banana | nucleus | 23.38 | 21.27 |
| GSMUA_Achr1P19120_001 | Banana | nucleus | 22.64 | 21.21 |
| GSMUA_Achr2P21280_001 | Banana | nucleus | 26.12 | 20.87 |
| GSMUA_Achr7P02770_001 | Banana | nucleus | 25.12 | 20.7 |
| GSMUA_Achr3P10600_001 | Banana | nucleus | 23.63 | 20.61 |
| GSMUA_Achr4P16120_001 | Banana | nucleus | 23.38 | 20.57 |
| GSMUA_Achr3P13490_001 | Banana | nucleus | 21.64 | 19.95 |
| GSMUA_Achr3P17290_001 | Banana | plastid | 26.37 | 18.6 |
| GSMUA_Achr10P... | Banana | mitochondrion | 29.35 | 17.93 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr10P20510_001 | EnsemblPlants:GSMUA_Achr10T20510_001 | EnsemblPlantsGene:GSMUA_Achr10G20510_001 | Gene3D:4.10.280.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0046983 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | InterPro:bHLH_dom |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF184 | PFAM:PF00010 | PFscan:PS50888 | SEG:seg | SMART:SM00353 |
| SUPFAM:SSF47459 | UniParc:UPI0002955F34 | UniProt:M0RJX6 | MapMan:15.5.32 | MapMan:26.1.2.1.2 | : |
Description
Putative Whole genome shotgun sequence of line PN40024, scaffold_38.assembly12x (Fragment) [Source:GMGC_GENE;Acc:GSMUA_Achr10G20510_001]
Coordinates
chr10:+:26462542..26466352
Molecular Weight (calculated)
44706.8 Da
IEP (calculated)
7.450
GRAVY (calculated)
-0.641
Length
402 amino acids
Sequence
(BLAST)
(BLAST)
001: MLEFTSAWLE LIRVRRRRPP EDLRRIMQCL RTPLSDLSVL ERQRTRAEWQ QQGQEQSDYH PYDADFCMQN LLPVETSFRA LHSCSGGGAN ENHGNVHGSN
101: DCFSNAWPDI VSSMHCPVVG AAASVEETSV NASSSSSSRK RKSENTRRSK ENSGGSDGKD DSNCKRIKEE TGGGAAPPEA KRPNKRKEES ADASKENDKA
201: PKSDYIHVRA RRGQATDSHS LAERVRRERI SQRMKYLQDL VPGCSKITGK AGMLDEIINY VQSLQRQVEF LSMKLAAVNP MMDINIDSFF GGREINPTCK
301: SGIIPMIGMS SELLDQSYLQ FGSLQHDMFM DSLDLLLRPN VNPPAAVSDT SLGSCLNVNG SSVWNTNLQN VYGVEFQLGR GTALPFQSLQ GNLLPNNLKM
401: EM
101: DCFSNAWPDI VSSMHCPVVG AAASVEETSV NASSSSSSRK RKSENTRRSK ENSGGSDGKD DSNCKRIKEE TGGGAAPPEA KRPNKRKEES ADASKENDKA
201: PKSDYIHVRA RRGQATDSHS LAERVRRERI SQRMKYLQDL VPGCSKITGK AGMLDEIINY VQSLQRQVEF LSMKLAAVNP MMDINIDSFF GGREINPTCK
301: SGIIPMIGMS SELLDQSYLQ FGSLQHDMFM DSLDLLLRPN VNPPAAVSDT SLGSCLNVNG SSVWNTNLQN VYGVEFQLGR GTALPFQSLQ GNLLPNNLKM
401: EM
001: MNGAIGGDLL LNFPDMSVLE RQRAHLKYLN PTFDSPLAGF FADSSMITGG EMDSYLSTAG LNLPMMYGET TVEGDSRLSI SPETTLGTGN FKKRKFDTET
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
Arabidopsis Description
BHLH63CIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178V495]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.