Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G34530.1 | CDX86636 | AT1G04400.1 | 22739826 |
| AT4G34530.1 | CDX89827 | AT1G04400.1 | 22739826 |
| AT4G34530.1 | CDY15503 | AT1G04400.1 | 22739826 |
| AT4G34530.1 | CDY18229 | AT1G04400.1 | 22739826 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra034636.1-P | Field mustard | nucleus | 98.8 | 87.9 |
| CDY17466 | Canola | nucleus | 94.0 | 84.53 |
| CDX75440 | Canola | nucleus | 70.4 | 53.5 |
| CDX69067 | Canola | nucleus | 66.8 | 49.12 |
| AT4G34530.1 | Thale cress | nucleus | 64.4 | 48.06 |
| CDY18099 | Canola | nucleus | 29.2 | 32.74 |
| CDY25986 | Canola | plastid | 27.2 | 31.19 |
| CDY33821 | Canola | mitochondrion, plastid | 23.6 | 30.1 |
| CDY37979 | Canola | nucleus | 30.8 | 28.95 |
| CDY08308 | Canola | nucleus | 33.6 | 28.77 |
| CDX93427 | Canola | nucleus | 30.8 | 28.73 |
| CDY05670 | Canola | nucleus | 29.2 | 28.29 |
| CDX86296 | Canola | nucleus | 30.0 | 27.68 |
| CDY64034 | Canola | nucleus | 33.6 | 27.36 |
| CDY72360 | Canola | cytosol | 16.4 | 27.33 |
| CDY45806 | Canola | nucleus | 31.6 | 26.96 |
| CDX79883 | Canola | nucleus | 32.0 | 26.49 |
| CDX98249 | Canola | nucleus | 29.6 | 26.43 |
| CDX84885 | Canola | nucleus | 31.2 | 26.26 |
| CDX77488 | Canola | nucleus | 34.0 | 25.84 |
| CDY56230 | Canola | nucleus | 34.4 | 25.83 |
| GSMUA_Achr6P09050_001 | Banana | nucleus | 32.4 | 25.63 |
| CDX85122 | Canola | nucleus | 33.6 | 25.38 |
| CDY53497 | Canola | nucleus | 31.2 | 25.24 |
| CDY31048 | Canola | nucleus | 31.6 | 25.16 |
| Zm00001d051569_P001 | Maize | nucleus | 34.4 | 25.15 |
| TraesCS6B01G300400.1 | Wheat | nucleus | 34.8 | 24.79 |
| CDX67710 | Canola | nucleus | 31.6 | 24.53 |
| EES05656 | Sorghum | nucleus | 35.2 | 24.51 |
| KRH51523 | Soybean | nucleus | 38.0 | 24.36 |
| TraesCS6D01G253000.1 | Wheat | nucleus | 34.4 | 24.29 |
| TraesCS6A01G273000.2 | Wheat | nucleus | 34.8 | 24.1 |
| CDY20659 | Canola | nucleus | 32.0 | 24.02 |
| Os02t0705500-01 | Rice | nucleus | 34.4 | 23.82 |
| CDX88966 | Canola | nucleus | 31.6 | 23.8 |
| CDX87255 | Canola | nucleus, plastid | 26.4 | 23.57 |
| CDY22605 | Canola | nucleus | 32.8 | 23.23 |
| Zm00001d017778_P001 | Maize | nucleus | 35.6 | 23.18 |
| CDY53834 | Canola | nucleus | 32.0 | 23.05 |
| KRH24463 | Soybean | nucleus | 37.2 | 23.02 |
| CDX71994 | Canola | nucleus | 33.2 | 22.99 |
| CDY61581 | Canola | plastid | 16.8 | 22.95 |
| KRH29448 | Soybean | nucleus | 38.4 | 22.8 |
| HORVU6Hr1G068980.2 | Barley | nucleus | 34.8 | 22.54 |
| CDY63738 | Canola | nucleus | 30.8 | 22.51 |
| CDY06074 | Canola | nucleus | 32.0 | 22.47 |
| KRH60839 | Soybean | nucleus | 38.4 | 22.33 |
| VIT_03s0038g04760.t01 | Wine grape | nucleus | 38.8 | 21.41 |
| CDY47665 | Canola | cytosol | 22.0 | 21.4 |
| CDY61420 | Canola | extracellular | 11.6 | 21.32 |
| Solyc01g109700.2.1 | Tomato | nucleus | 36.4 | 20.97 |
| GSMUA_Achr10P... | Banana | nucleus | 33.6 | 20.9 |
| PGSC0003DMT400001888 | Potato | nucleus | 36.8 | 20.81 |
| CDY47666 | Canola | endoplasmic reticulum, extracellular | 11.2 | 20.29 |
| CDY51061 | Canola | nucleus | 34.8 | 20.09 |
| CDY57925 | Canola | nucleus | 31.2 | 19.6 |
| CDY35923 | Canola | nucleus, plastid | 34.8 | 19.42 |
| CDX86297 | Canola | nucleus | 37.2 | 18.98 |
| CDX85347 | Canola | nucleus | 37.2 | 18.94 |
| CDY28061 | Canola | nucleus | 33.6 | 18.54 |
| CDY45835 | Canola | nucleus | 32.4 | 17.88 |
| CDX95974 | Canola | nucleus | 33.2 | 17.33 |
| CDX81575 | Canola | nucleus | 32.8 | 17.26 |
| CDY33568 | Canola | nucleus | 33.2 | 17.22 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | GO:A0A078CMH5 | EnsemblPlants:CDX76288 | ProteinID:CDX76288 |
| ProteinID:CDX76288.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00126653001 |
| InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 | PANTHER:PTHR12565 |
| PANTHER:PTHR12565:SF184 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EEA7CE | InterPro:bHLH_dom | SEG:seg |
Description
BnaA08g11120D
Coordinates
chrLK031807:+:156795..158005
Molecular Weight (calculated)
28222.7 Da
IEP (calculated)
7.981
GRAVY (calculated)
-0.568
Length
250 amino acids
Sequence
(BLAST)
(BLAST)
001: MMMMMMNGAT EAELLLNCTN MSFLQLQRDH LRYHHHPGFF SNFSTINGGE SDGFLATTGL NIPDIYREKT TESDAILSMS PENITTSATF VSENLKKRKL
101: DDVVTETKVC DEKRMMMRNK AKKEENNFSN DSSKVTKGSQ KRDYIHVRAR RGQATDSHSI AERARREKIS ERMKYLQALV PGCDKITSKA GKLDEIINYV
201: LSLQTQVEFL SMKLAALNSS SDPPLQCFNN GQAPSMWEPD VQSLYSSLGV
101: DDVVTETKVC DEKRMMMRNK AKKEENNFSN DSSKVTKGSQ KRDYIHVRAR RGQATDSHSI AERARREKIS ERMKYLQALV PGCDKITSKA GKLDEIINYV
201: LSLQTQVEFL SMKLAALNSS SDPPLQCFNN GQAPSMWEPD VQSLYSSLGV
001: MNGAIGGDLL LNFPDMSVLE RQRAHLKYLN PTFDSPLAGF FADSSMITGG EMDSYLSTAG LNLPMMYGET TVEGDSRLSI SPETTLGTGN FKKRKFDTET
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
101: KDCNEKKKKM TMNRDDLVEE GEEEKSKITE QNNGSTKSIK KMKHKAKKEE NNFSNDSSKV TKELEKTDYI HVRARRGQAT DSHSIAERVR REKISERMKF
201: LQDLVPGCDK ITGKAGMLDE IINYVQSLQR QIEFLSMKLA IVNPRPDFDM DDIFAKEVAS TPMTVVPSPE MVLSGYSHEM VHSGYSSEMV NSGYLHVNPM
301: QQVNTSSDPL SCFNNGEAPS MWDSHVQNLY GNLGV
Arabidopsis Description
BHLH63CIB1 [Source:UniProtKB/TrEMBL;Acc:A0A178V495]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.