Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G48560.1 | CDY30379 | AT2G43060.1 | 21798944 |
| AT5G48560.1 | CDY53659 | AT2G43060.1 | 21798944 |
| AT5G48560.1 | CDY55504 | AT2G43060.1 | 21798944 |
| AT5G48560.1 | CDY56346 | AT2G43060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra020691.1-P | Field mustard | nucleus | 94.92 | 92.36 |
| CDY05670 | Canola | nucleus | 51.96 | 87.21 |
| CDX85347 | Canola | nucleus | 84.53 | 74.54 |
| CDX86296 | Canola | nucleus | 46.65 | 74.54 |
| CDX86297 | Canola | nucleus | 84.06 | 74.29 |
| AT5G48560.1 | Thale cress | nucleus | 83.37 | 72.49 |
| CDY28061 | Canola | nucleus | 58.66 | 56.07 |
| CDY35923 | Canola | nucleus, plastid | 57.04 | 55.13 |
| CDY72360 | Canola | cytosol | 14.78 | 42.67 |
| CDY25986 | Canola | plastid | 19.63 | 38.99 |
| KRG99606 | Soybean | nucleus | 50.58 | 37.76 |
| CDY08308 | Canola | nucleus | 25.17 | 37.33 |
| CDY64034 | Canola | nucleus | 26.1 | 36.81 |
| CDY18099 | Canola | nucleus | 18.94 | 36.77 |
| KRH46615 | Soybean | nucleus | 49.42 | 36.52 |
| CDY37979 | Canola | nucleus | 22.4 | 36.47 |
| CDX93427 | Canola | nucleus | 22.4 | 36.19 |
| KRH07417 | Soybean | nucleus, plastid | 49.19 | 36.16 |
| KRH66158 | Soybean | nucleus, plastid | 48.96 | 35.69 |
| CDY45806 | Canola | nucleus | 23.79 | 35.15 |
| CDX77488 | Canola | nucleus | 26.56 | 34.95 |
| CDX76288 | Canola | nucleus | 20.09 | 34.8 |
| CDX85122 | Canola | nucleus | 26.56 | 34.74 |
| CDY33821 | Canola | mitochondrion, plastid | 15.7 | 34.69 |
| CDX84885 | Canola | nucleus | 23.56 | 34.34 |
| CDY56230 | Canola | nucleus | 26.33 | 34.23 |
| CDX98249 | Canola | nucleus | 21.48 | 33.21 |
| CDX87255 | Canola | nucleus, plastid | 21.25 | 32.86 |
| CDY17466 | Canola | nucleus | 20.79 | 32.37 |
| CDX67710 | Canola | nucleus | 23.09 | 31.06 |
| CDX88966 | Canola | nucleus | 23.79 | 31.02 |
| CDX75440 | Canola | nucleus | 22.86 | 30.09 |
| CDY61581 | Canola | plastid | 12.7 | 30.05 |
| CDX79883 | Canola | nucleus | 20.79 | 29.8 |
| CDY47666 | Canola | endoplasmic reticulum, extracellular | 9.47 | 29.71 |
| CDY31048 | Canola | nucleus | 21.48 | 29.62 |
| CDY61420 | Canola | extracellular | 9.24 | 29.41 |
| CDX69067 | Canola | nucleus | 22.86 | 29.12 |
| CDX71994 | Canola | nucleus | 24.25 | 29.09 |
| CDY06074 | Canola | nucleus | 23.79 | 28.93 |
| CDY20659 | Canola | nucleus | 22.17 | 28.83 |
| CDY53497 | Canola | nucleus | 20.55 | 28.8 |
| CDY63738 | Canola | nucleus | 21.94 | 27.78 |
| CDY47665 | Canola | cytosol | 16.17 | 27.24 |
| CDY22605 | Canola | nucleus | 22.17 | 27.2 |
| CDY53834 | Canola | nucleus | 21.71 | 27.09 |
| CDY45835 | Canola | nucleus | 27.94 | 26.71 |
| CDX81575 | Canola | nucleus | 28.18 | 25.68 |
| CDY33568 | Canola | nucleus | 27.94 | 25.1 |
| CDX95974 | Canola | nucleus | 27.71 | 25.05 |
| CDY57925 | Canola | nucleus | 22.17 | 24.12 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | GO:A0A078IM55 | UniProt:A0A078IM55 | EnsemblPlants:CDY51061 |
| ProteinID:CDY51061 | ProteinID:CDY51061.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0046983 | EnsemblPlantsGene:GSBRNA2T00098107001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 |
| PFscan:PS50888 | PANTHER:PTHR12565 | PANTHER:PTHR12565:SF184 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EEC762 |
| InterPro:bHLH_dom | SEG:seg | : | : | : | : |
Description
BnaA02g30270DBnaA02g30270D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IM55]
Coordinates
chrLK032961:-:63215..65674
Molecular Weight (calculated)
47819.3 Da
IEP (calculated)
7.727
GRAVY (calculated)
-0.635
Length
433 amino acids
Sequence
(BLAST)
(BLAST)
001: MDNELFMNTE LHPPPEMAMH FEQPSCSSPM LNWPLMNPNL SQYSPPQDCF TWEKSTEQQQ KQSIFDSALS SLVSSPTPSN SNFSGGVGGG DGFVIRELIG
101: KLGNSSTTPN RTTPLTEFSG DPGFAERAAR FSCFGSRSFN GRTNSSLPVN NSKIINSGKL TRVVSTPALH GLVSPMAPAG EFSRKRKHLT KVKSKETPLP
201: TASPAPSFSK TAEEKGGKRR RREDEKEDNT KGPEPPKDYI HVRARRGQAT DSHSLAERVR REKIGERMKL LENLVPGCNK VTGKALMLDE IINYVQSLQR
301: QVEFLSMKLS SVNDTRLDFN VDALVSKDVM IPSSSNRLHE AGLQAESLSH HSYDNSSQLH TNVSSSNMML QSPVNSLETS TLASSFTHLP TLTQFTDSIS
401: QYQMFSQEDL QSIVGMGVAH NPNHESQNMK IEL
101: KLGNSSTTPN RTTPLTEFSG DPGFAERAAR FSCFGSRSFN GRTNSSLPVN NSKIINSGKL TRVVSTPALH GLVSPMAPAG EFSRKRKHLT KVKSKETPLP
201: TASPAPSFSK TAEEKGGKRR RREDEKEDNT KGPEPPKDYI HVRARRGQAT DSHSLAERVR REKIGERMKL LENLVPGCNK VTGKALMLDE IINYVQSLQR
301: QVEFLSMKLS SVNDTRLDFN VDALVSKDVM IPSSSNRLHE AGLQAESLSH HSYDNSSQLH TNVSSSNMML QSPVNSLETS TLASSFTHLP TLTQFTDSIS
401: QYQMFSQEDL QSIVGMGVAH NPNHESQNMK IEL
001: MDNELFMNTE FPPPPEMATH FEHQQSSSSA MMLNWALMDP NPHQDSSFLW EKSTEQQQQQ SIFDSALSSL VSSPTPSNSN FSGGGGDGFL IRELIGKLGN
101: IGNNNNNSGE IYGTPMSRSA SCYATPMSSP PPPTNSNSQM MMNRTTPLTE FSADPGFAER AARFSCFGSR SFNGRTNTNL PINNGNNMVN NSGKLTRVSS
201: TPALKALVSP EVTPGGEFSR KRKSVPKGKS KENPISTASP SPSFSKTAEK NGGKGGSKSS EEKGGKRRRE EEDDEEEEGE GEGNKSNNTK PPEPPKDYIH
301: VRARRGQATD SHSLAERVRR EKIGERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ VEFLSMKLSS VNDTRLDFNV DALVSKDVMI PSSNNRLHEE
401: GLQSKSSSHH HQQQLNIYNN NSQLLPNISS NNMMLQSPMN SLETSTLARS FTHLPTLTQF TDSISQYQMF SEEDLQSIVG MGVAENPNNE SQHMKIEL
101: IGNNNNNSGE IYGTPMSRSA SCYATPMSSP PPPTNSNSQM MMNRTTPLTE FSADPGFAER AARFSCFGSR SFNGRTNTNL PINNGNNMVN NSGKLTRVSS
201: TPALKALVSP EVTPGGEFSR KRKSVPKGKS KENPISTASP SPSFSKTAEK NGGKGGSKSS EEKGGKRRRE EEDDEEEEGE GEGNKSNNTK PPEPPKDYIH
301: VRARRGQATD SHSLAERVRR EKIGERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ VEFLSMKLSS VNDTRLDFNV DALVSKDVMI PSSNNRLHEE
401: GLQSKSSSHH HQQQLNIYNN NSQLLPNISS NNMMLQSPMN SLETSTLARS FTHLPTLTQF TDSISQYQMF SEEDLQSIVG MGVAENPNNE SQHMKIEL
Arabidopsis Description
BHLH78Transcription factor bHLH78 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJL4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.