Factsheet for Bra020691.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra004740.1-P
Bra037738.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G48560.1	Bra004740.1-P	AT2G43060.1	21798944
AT5G48560.1	Bra037738.1-P	AT2G43060.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51061	Canola	nucleus	92.36	94.92
Bra037478.1-P	Field mustard	nucleus	84.04	76.33
AT5G48560.1	Thale cress	nucleus	83.6	74.7
Bra029640.1-P	Field mustard	nucleus, plastid	56.63	56.76
KRG99606	Soybean	nucleus	50.79	38.97
Bra037059.1-P	Field mustard	nucleus	24.94	38.81
KRH46615	Soybean	nucleus	48.99	37.2
KRH07417	Soybean	nucleus, plastid	48.76	36.84
KRH66158	Soybean	nucleus, plastid	48.54	36.36
Bra019935.1-P	Field mustard	nucleus	21.8	36.19
Bra028335.1-P	Field mustard	nucleus	26.74	35.84
Bra014972.1-P	Field mustard	nucleus	25.84	34.95
Bra022753.1-P	Field mustard	nucleus	22.92	34.34
Bra034636.1-P	Field mustard	nucleus	20.9	33.1
Bra038336.1-P	Field mustard	plastid	25.84	31.51
Bra003300.1-P	Field mustard	nucleus	22.47	31.06
Bra011540.1-P	Field mustard	nucleus	22.47	30.49
Bra004679.1-P	Field mustard	nucleus	20.22	29.8
Bra014603.1-P	Field mustard	nucleus	22.92	29.48
Bra031700.1-P	Field mustard	nucleus	21.57	29.36
Bra007358.1-P	Field mustard	nucleus	23.37	29.05
Bra019962.1-P	Field mustard	nucleus	22.02	28.91
Bra018461.1-P	Field mustard	nucleus	20.9	28.88
Bra004348.1-P	Field mustard	nucleus	28.31	26.47

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra020691	EnsemblPlants:Bra020691.1	EnsemblPlants:Bra020691.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:M4DVZ7	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI0002546323	InterPro:bHLH_dom	SEG:seg

Description

AT5G48560 (E=9e-101) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA02:+:23730236..23732593

Molecular Weight (calculated)

48842.5 Da

IEP (calculated)

8.034

GRAVY (calculated)

-0.627

Length

445 amino acids

Sequence
(BLAST)

001: MDNELIMNTE LHPPPEIAAH FEQPSCSSPM LNWPLMNSNL SQYSPPQDCF TWEKSTEQQQ KQSIFDSALS SLVSSPTPSN SNFSGGVGGG DGFVIRELIG
101: KLGNVGNSSA TPMSSPPPMM NRTTPLTEFS GDPGFAERAA RFSCFGSQSF NGRTNSSLPV NNNGKIVNSG KLTRVASTPA LNGFVSPMVP AGKFSRKRKS
201: MTKGKSKENP LPTASPAPSF TKTAEEKGGK RRRREDEKED NTKAPEPPKD YIHVRARRGQ ATDSHSLAER VRREKIGERM KLLEDLVPGC NKVTGKALML
301: DEIINYVQSL QRQVEFLSMK LSSVNDTRLD FNVDALVSKD VMIPSSSNRL HEAGLQAESL SHHSYNNNSQ LHTNVSSSNM MLQSPVNSLE TSTLASSFTH
401: LPTLTQFTDS ISQYQMFSQE DLQSIVGMGV AHNPNHESQN MKIEL

Best Arabidopsis Sequence Match ( AT5G48560.1 )
(BLAST)

001: MDNELFMNTE FPPPPEMATH FEHQQSSSSA MMLNWALMDP NPHQDSSFLW EKSTEQQQQQ SIFDSALSSL VSSPTPSNSN FSGGGGDGFL IRELIGKLGN
101: IGNNNNNSGE IYGTPMSRSA SCYATPMSSP PPPTNSNSQM MMNRTTPLTE FSADPGFAER AARFSCFGSR SFNGRTNTNL PINNGNNMVN NSGKLTRVSS
201: TPALKALVSP EVTPGGEFSR KRKSVPKGKS KENPISTASP SPSFSKTAEK NGGKGGSKSS EEKGGKRRRE EEDDEEEEGE GEGNKSNNTK PPEPPKDYIH
301: VRARRGQATD SHSLAERVRR EKIGERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ VEFLSMKLSS VNDTRLDFNV DALVSKDVMI PSSNNRLHEE
401: GLQSKSSSHH HQQQLNIYNN NSQLLPNISS NNMMLQSPMN SLETSTLARS FTHLPTLTQF TDSISQYQMF SEEDLQSIVG MGVAENPNNE SQHMKIEL

Arabidopsis Description

BHLH78Transcription factor bHLH78 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJL4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.