Factsheet for Bra014603.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88966	Canola	nucleus	93.64	97.59
CDY47666	Canola	endoplasmic reticulum, extracellular	36.42	91.3
Bra003300.1-P	Field mustard	nucleus	72.25	77.64
Bra007358.1-P	Field mustard	nucleus	76.01	73.46
AT3G57800.1	Thale cress	nucleus	80.64	65.49
Bra004679.1-P	Field mustard	nucleus	56.94	65.23
VIT_08s0007g07870.t01	Wine grape	nucleus	53.47	50.82
KRG95332	Soybean	nucleus	51.16	48.36
KRH71879	Soybean	nucleus	49.13	48.02
KRH33022	Soybean	nucleus	48.55	47.06
PGSC0003DMT400021130	Potato	nucleus	47.69	45.83
Solyc10g079070.1.1	Tomato	nucleus	47.4	45.43
KRH67006	Soybean	nucleus	50.0	43.25
TraesCS7B01G303300.1	Wheat	nucleus	39.02	42.99
TraesCS7D01G397300.1	Wheat	nucleus, plastid	39.02	42.72
GSMUA_Achr1P19610_001	Banana	nucleus	43.93	41.64
TraesCS7A01G403900.1	Wheat	cytosol	18.5	41.56
GSMUA_Achr4P19330_001	Banana	nucleus	46.24	41.34
HORVU7Hr1G094690.1	Barley	plastid	28.9	40.49
GSMUA_Achr9P22300_001	Banana	nucleus	32.08	38.28
GSMUA_Achr7P06330_001	Banana	nucleus	40.17	37.98
Zm00001d046759_P001	Maize	plastid	37.57	36.52
Zm00001d036807_P001	Maize	nucleus	38.15	35.68
OQU76702	Sorghum	nucleus	38.73	32.68
Bra037059.1-P	Field mustard	nucleus	26.88	32.52
Bra019935.1-P	Field mustard	nucleus	23.41	30.22
Bra034636.1-P	Field mustard	nucleus	24.28	29.89
Bra011540.1-P	Field mustard	nucleus	28.03	29.57
Bra022753.1-P	Field mustard	nucleus	24.57	28.62
Bra028335.1-P	Field mustard	nucleus	26.88	28.01
Bra038336.1-P	Field mustard	plastid	28.61	27.12
Bra014972.1-P	Field mustard	nucleus	25.72	27.05
Bra031700.1-P	Field mustard	nucleus	23.41	24.77
Bra029640.1-P	Field mustard	nucleus, plastid	31.21	24.32
Bra018461.1-P	Field mustard	nucleus	22.54	24.22
Bra020691.1-P	Field mustard	nucleus	29.48	22.92
Bra019962.1-P	Field mustard	nucleus	22.25	22.71
Bra004348.1-P	Field mustard	nucleus	30.64	22.27
Bra037478.1-P	Field mustard	nucleus	29.19	20.61
Os09t0474051-01	Rice	plastid	16.76	9.91

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra014603	EnsemblPlants:Bra014603.1	EnsemblPlants:Bra014603.1-P
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:M4DDN5	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565
PANTHER:PTHR12565:SF112	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00025443A8	InterPro:bHLH_dom	SEG:seg

Description

AT3G57800 (E=3e-119) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA04:+:1699281..1702360

Molecular Weight (calculated)

38184.8 Da

IEP (calculated)

6.379

GRAVY (calculated)

-0.680

Length

346 amino acids

Sequence
(BLAST)

001: MDLSGRFGAR SGDGVPFREA AALESLHIGG GEEFRQMVPP ENAGGFAALL ELPPTQAVEL LHSSSSSASQ ATTLHSLGTL SFPSNPLLME RASRFSVIAT
101: DNQQNGNVSG ETTTTSSVPS NEHIKTEPAE TETCDQAAVE KQSNRCGKRK ELDKKVKSST KKKNKSSEEN EKLPYVHVRA RRGQATDSHS LAERARREKI
201: NARMKLLQEL VPGCDKIQGT ALVLDEIINH VQSLQRQVEM LSMRLASVNP RIDFNLDTIL ASENGSLMDG SFNGATMQLA WPLQVMETEQ SYHHRQLQQP
301: PSQQWPFDGL NQPVWGREEN QDHGNDHNNL MVGSTSLHPN QVKMEL

Best Arabidopsis Sequence Match ( AT3G57800.2 )
(BLAST)

001: MDLTGGFGAR SGGVGPCREP IGLESLHLGD EFRQLVTTLP PENPGGSFTA LLELPPTQAV ELLHFTDSSS SQQAAVTGIG GEIPPPLHSF GGTLAFPSNS
101: VLMERAARFS VIATEQQNGN ISGETPTSSV PSNSSANLDR VKTEPAETDS SQRLISDSAI ENQIPCPNQN NRNGKRKDFE KKGKSSTKKN KSSEENEKLP
201: YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC DKIQGTALVL DEIINHVQSL QRQVEMLSMR LAAVNPRIDF NLDTILASEN GSLMDGSFNA
301: APMQLAWPQQ AIETEQSFHH RQLQQPPTQQ WPFDGLNQPV WGREEDQAHG NDNSNLMAVS ENVMVASANL HPNQVKMEL

Arabidopsis Description

BHLH60Transcription factor bHLH60 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAI1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.