Factsheet for Bra028335.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72360	Canola	cytosol	44.88	99.33
CDY18099	Canola	nucleus	65.66	97.76
CDY56230	Canola	nucleus	94.58	94.29
Bra014972.1-P	Field mustard	nucleus	81.33	82.07
AT3G23690.1	Thale cress	nucleus	87.65	78.44
Bra037059.1-P	Field mustard	nucleus	57.23	66.43
Bra019935.1-P	Field mustard	nucleus	27.41	33.96
Bra022753.1-P	Field mustard	nucleus	29.82	33.33
Bra034636.1-P	Field mustard	nucleus	27.41	32.38
Solyc09g097870.2.1	Tomato	nucleus	41.87	32.25
PGSC0003DMT400042791	Potato	nucleus	41.87	31.66
Bra038336.1-P	Field mustard	plastid	33.43	30.41
Solyc12g098620.1.1	Tomato	nucleus	36.75	30.2
Bra011540.1-P	Field mustard	nucleus	29.82	30.18
PGSC0003DMT400011651	Potato	nucleus	37.05	29.78
Bra031700.1-P	Field mustard	nucleus	28.92	29.36
Bra018461.1-P	Field mustard	nucleus	27.71	28.57
Bra004679.1-P	Field mustard	nucleus	25.0	27.48
Bra019962.1-P	Field mustard	nucleus	28.01	27.43
Bra003300.1-P	Field mustard	nucleus	26.51	27.33
Bra014603.1-P	Field mustard	nucleus	28.01	26.88
Bra020691.1-P	Field mustard	nucleus	35.84	26.74
Bra037478.1-P	Field mustard	nucleus	38.25	25.92
Bra029640.1-P	Field mustard	nucleus, plastid	34.64	25.9
Bra007358.1-P	Field mustard	nucleus	27.71	25.7
Bra004348.1-P	Field mustard	nucleus	34.34	23.95
VIT_05s0029g00390.t01	Wine grape	nucleus	37.35	22.79

Protein Annotations

EnsemblPlants:Bra028335.1	EnsemblPlants:Bra028335.1-P	EnsemblPlantsGene:Bra028335	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	PFAM:PF00010	PFscan:PS50888	SEG:seg	SMART:SM00353
SUPFAM:SSF47459	UniParc:UPI00025437D5	UniProt:M4EHS0	MapMan:15.5.32	MapMan:26.1.2.1.2	:

Description

AT3G23690 (E=3e-126) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA01:+:18429330..18431035

Molecular Weight (calculated)

36643.9 Da

IEP (calculated)

7.407

GRAVY (calculated)

-0.843

Length

332 amino acids

Sequence
(BLAST)

001: MEKQTLKYLP LGQSDPFGNG NGNEGTIGDL LGRFCNPQES FSPGIRFPPY PGQFGSDRES NKSSLLDPDS DRVPTTKPNS RKRKSIPVGN GKDSPASSSL
101: TASHSKVSGE NVVSKDGKRS KQDEAGSSKK VIDKCDDSKG DNKDDAKPTK DYIHVRARRG QATDSHSLAE RARREKISER MTMLQDLVPG CNRITGKAVM
201: LDEIINYVQS LQRQVEFLSM KLATVNPRME FNANAALSTE MIQQGESLTQ SLYAMACSEQ RLPSGGYYSL TKNMPRFSDT HLPSSDGFVQ AETQGFWEND
301: LQSIVQMGFG DIQQQQSNNN CSEPTLQMKL EP

Best Arabidopsis Sequence Match ( AT3G23690.1 )
(BLAST)

001: MNMDKETEQT LNYLPLGQSD PFGNGNEGTI GDFLGRYCNN PQEISPLTLQ SFSLNSQISE NFPISGGIRF PPYPGQFGSD REFGSQPTTQ ESNKSSLLDP
101: DSVSDRVHTT KSNSRKRKSI PSGNGKESPA SSSLTASNSK VSGENGGSKG GKRSKQDVAG SSKNGVEKCD SKGDNKDDAK PPEAPKDYIH VRARRGQATD
201: SHSLAERARR EKISERMTLL QDLVPGCNRI TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRMEFNAN ASLSTEMIQP GESLTQSLYA MACSEQRLPS
301: AYYSLGKNMP RFSDTQFPSN DGFVHTETPG FWENNDLQSI VQMGFGDILQ QQSNNNNNNC SEPTLQMKLE P

Arabidopsis Description

BHLH77Transcription factor bHLH77 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.