Factsheet for Bra038336.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 5
plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45835	Canola	nucleus	95.07	76.6
Bra004348.1-P	Field mustard	nucleus	85.21	65.34
AT1G68920.1	Thale cress	nucleus	82.74	62.14
GSMUA_Achr6P36210_001	Banana	nucleus	30.14	40.0
VIT_01s0010g00740.t01	Wine grape	nucleus	46.3	36.03
Bra037059.1-P	Field mustard	nucleus	27.67	35.31
PGSC0003DMT400050585	Potato	nucleus	49.59	34.81
Solyc05g010610.2.1	Tomato	nucleus	48.49	34.24
KRH75189	Soybean	nucleus	50.96	33.82
KRH71031	Soybean	nucleus	50.68	33.58
Bra028335.1-P	Field mustard	nucleus	30.41	33.43
TraesCS5B01G248600.1	Wheat	nucleus	38.63	33.25
TraesCS5D01G258300.1	Wheat	nucleus	38.63	33.25
Os09t0474100-01	Rice	nucleus	38.9	33.18
TraesCS5A01G250600.1	Wheat	nucleus	38.63	33.18
PGSC0003DMT400004830	Potato	nucleus	41.92	33.05
Bra019935.1-P	Field mustard	nucleus	24.11	32.84
GSMUA_Achr8P24490_001	Banana	nucleus	36.99	32.61
PGSC0003DMT400022704	Potato	nucleus	47.67	32.52
KXG35834	Sorghum	nucleus	38.9	32.49
Zm00001d020826_P001	Maize	nucleus	38.36	32.26
GSMUA_Achr9P18510_001	Banana	nucleus	27.4	32.05
Os06t0275600-01	Rice	cytosol, nucleus	38.08	31.81
Solyc01g010130.2.1	Tomato	nucleus	46.58	31.66
Bra014972.1-P	Field mustard	nucleus	28.49	31.61
GSMUA_Achr9P28060_001	Banana	nucleus	26.3	31.37
Bra031700.1-P	Field mustard	nucleus	27.4	30.58
Bra018461.1-P	Field mustard	nucleus	26.85	30.43
Solyc04g005220.1.1	Tomato	nucleus	34.79	30.31
Bra011540.1-P	Field mustard	nucleus	27.12	30.18
Bra003300.1-P	Field mustard	nucleus	26.58	30.12
Zm00001d005964_P002	Maize	nucleus	37.26	30.02
Bra034636.1-P	Field mustard	nucleus	23.01	29.89
Bra004679.1-P	Field mustard	nucleus	24.38	29.47
Bra022753.1-P	Field mustard	nucleus	23.84	29.29
Bra014603.1-P	Field mustard	nucleus	27.12	28.61
Bra019962.1-P	Field mustard	nucleus	26.03	28.02
Bra007358.1-P	Field mustard	nucleus	26.3	26.82
OQU81018	Sorghum	nucleus	26.85	26.13
Bra029640.1-P	Field mustard	nucleus, plastid	31.51	25.9
Bra020691.1-P	Field mustard	nucleus	31.51	25.84
GSMUA_Achr3P10600_001	Banana	nucleus	31.23	24.73
TraesCS7A01G211900.1	Wheat	nucleus	29.32	24.32
TraesCS7D01G213500.1	Wheat	nucleus	29.32	24.32
HORVU0Hr1G020200.1	Barley	nucleus	29.32	24.32
TraesCS7B01G118800.1	Wheat	nucleus	28.77	23.86
Bra037478.1-P	Field mustard	nucleus	31.51	23.47
Os08t0487700-00	Rice	nucleus	20.82	22.16

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EnsemblPlantsGene:Bra038336	EnsemblPlants:Bra038336.1	EnsemblPlants:Bra038336.1-P
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0043565
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	UniProt:M4FB70	PFAM:PF00010
PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00025464AD
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

AT1G68920 (E=7e-122) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA02:+:11182431..11184045

Molecular Weight (calculated)

39706.5 Da

IEP (calculated)

8.653

GRAVY (calculated)

-0.766

Length

365 amino acids

Sequence
(BLAST)

001: MPNLLPSKGN GLFLPNASSF LPPSMAQFPA DSGFIERAAR FSLFSDMVNQ PLGNPESVGL FLQGQCPSSE VNVGVATTAV RDPNVRSSEL VSKPNVSEDT
101: RSSGQKGGET SSKDSKKRKR NRQNSEADQS HKTEEEAENN GDKKGSDEQS PNSPGNKTNS GKQQGKQTSD PKDGYIHVRA RRGQATNSHS LAERVRREKI
201: SERMKFLQDL VPGCNKVTGK AVMLDEIINY VQSLQRQVEF LSMKLATVNP QMDFNLESLL AKDVRELQLR GGSSSATPFP QNMPMVYPPL PHGFMQQTLS
301: SIGRNITSPL SPMNGGYKRQ ETNGWEGDLQ NVIHINYGAG DVPSDPEAAA TATASLPSSN MKVEP

Best Arabidopsis Sequence Match ( AT1G68920.3 )
(BLAST)

001: MDLSAKDEFS AEKRNPDNYD SVNNPSGDWR VDSYPSENLI SAGPASCSPS QMMDSFGQTL WYDPTSVQAV GYAGFNGGNA SSSSFRGSID RSLEMGWNLP
101: NLLPPKGNGL FLPNASSFLP PSMAQFPADS GFIERAARFS LFSGGNFSDM VNQPLGNSEA IGLFLQGGGT MQGQCQSNEL NVGEPHNDVS VAVKESTVRS
201: SEQAKPNVPG SGNVSEDTQS SGGNGQKGRE TSSNTKKRKR NGQNSEAAQS HRSQQSEEEP DNNGDEKRND EQSPNSPGKK SNSGKQQGKQ SSDPPKDGYI
301: HVRARRGQAT NSHSLAERVR REKISERMKF LQDLVPGCNK VTGKAVMLDE IINYVQSLQR QVEFLSMKLA TVNPQMDFNL EGLLAKDALQ LRAGSSSTTP
401: FPPNMSMAYP PLPHGFMQQT LSSIGRTITS PLSPMNGGFK RQETNGWEGD LQNVIHINYG AGDVTPDPQA AATASLPAAN MKVEP

Arabidopsis Description

BHLH49Transcription factor bHLH49 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAA9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.