Factsheet for Bra037059.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08308	Canola	nucleus	97.55	95.55
Bra028335.1-P	Field mustard	nucleus	66.43	57.23
Bra014972.1-P	Field mustard	nucleus	64.69	56.23
Bra019935.1-P	Field mustard	nucleus	28.67	30.6
Bra034636.1-P	Field mustard	nucleus	29.72	30.25
Solyc09g097870.2.1	Tomato	nucleus	43.71	29.0
Bra022753.1-P	Field mustard	nucleus	30.07	28.96
PGSC0003DMT400042791	Potato	nucleus	44.06	28.7
Bra004679.1-P	Field mustard	nucleus	30.07	28.48
Bra011540.1-P	Field mustard	nucleus	32.17	28.05
Bra038336.1-P	Field mustard	plastid	35.31	27.67
Bra003300.1-P	Field mustard	nucleus	31.12	27.64
Bra031700.1-P	Field mustard	nucleus	31.47	27.52
PGSC0003DMT400011651	Potato	nucleus	39.16	27.12
Bra014603.1-P	Field mustard	nucleus	32.52	26.88
Solyc12g098620.1.1	Tomato	nucleus	37.76	26.73
Bra007358.1-P	Field mustard	nucleus	32.17	25.7
Bra018461.1-P	Field mustard	nucleus	28.67	25.47
Bra020691.1-P	Field mustard	nucleus	38.81	24.94
Bra037478.1-P	Field mustard	nucleus	41.26	24.08
Bra019962.1-P	Field mustard	nucleus	28.32	23.89
Bra029640.1-P	Field mustard	nucleus, plastid	36.36	23.42
Bra004348.1-P	Field mustard	nucleus	36.36	21.85
VIT_05s0029g00390.t01	Wine grape	nucleus	37.76	19.85

Protein Annotations

EnsemblPlants:Bra037059.1	EnsemblPlants:Bra037059.1-P	EnsemblPlantsGene:Bra037059	Gene3D:4.10.280.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	InterPro:bHLH_dom
PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	PFAM:PF00010	PFscan:PS50888	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI0002547500	UniProt:M4F7J8	MapMan:15.5.32	MapMan:26.1.2.1.2	:	:

Description

AT3G23690 (E=5e-055) | basic helix-loop-helix (bHLH) family protein

Coordinates

chrA05:+:9653113..9654495

Molecular Weight (calculated)

32109.9 Da

IEP (calculated)

5.486

GRAVY (calculated)

-0.696

Length

286 amino acids

Sequence
(BLAST)

001: MDKETEETLN YLLPFGDGND PMMISDFVGR FCDTQEFPVG FPYLGHFGHS QVQESNKSSL LDPGSVSGTG KTRPNSRKRK ESPASNSKMQ EENNAAVAGK
101: QNETEKGENK DKEKLSEPYK DYIHVRARRG QATDSHSIAE RARREKISAR MKLLQDLVPG CNRITGKAVM LDEIINYVES LQRQVQFLSM KLATINPRTE
201: FNAANAMLSA EMLQLGESLS CSESRFPSEY LAVGKNILSE GFVQAEAPAF WENDLQSIVH MGFRDCQQQS INCSEPTVQM KIEPER

Best Arabidopsis Sequence Match ( AT3G23690.1 )
(BLAST)

001: MNMDKETEQT LNYLPLGQSD PFGNGNEGTI GDFLGRYCNN PQEISPLTLQ SFSLNSQISE NFPISGGIRF PPYPGQFGSD REFGSQPTTQ ESNKSSLLDP
101: DSVSDRVHTT KSNSRKRKSI PSGNGKESPA SSSLTASNSK VSGENGGSKG GKRSKQDVAG SSKNGVEKCD SKGDNKDDAK PPEAPKDYIH VRARRGQATD
201: SHSLAERARR EKISERMTLL QDLVPGCNRI TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRMEFNAN ASLSTEMIQP GESLTQSLYA MACSEQRLPS
301: AYYSLGKNMP RFSDTQFPSN DGFVHTETPG FWENNDLQSI VQMGFGDILQ QQSNNNNNNC SEPTLQMKLE P

Arabidopsis Description

BHLH77Transcription factor bHLH77 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK48]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.