Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra037059.1-P | Field mustard | nucleus | 95.55 | 97.55 |
| CDY64034 | Canola | nucleus | 95.21 | 90.55 |
| CDY72360 | Canola | cytosol | 34.25 | 66.67 |
| CDX77488 | Canola | nucleus | 65.75 | 58.36 |
| CDX85122 | Canola | nucleus | 65.41 | 57.7 |
| CDY56230 | Canola | nucleus | 64.04 | 56.16 |
| CDY18099 | Canola | nucleus | 42.81 | 56.05 |
| CDY05670 | Canola | nucleus | 33.22 | 37.6 |
| CDY25986 | Canola | plastid | 27.74 | 37.16 |
| CDX86296 | Canola | nucleus | 34.25 | 36.9 |
| CDY33821 | Canola | mitochondrion, plastid | 23.29 | 34.69 |
| CDX76288 | Canola | nucleus | 28.77 | 33.6 |
| CDY37979 | Canola | nucleus | 27.74 | 30.45 |
| CDX98249 | Canola | nucleus | 29.11 | 30.36 |
| CDX93427 | Canola | nucleus | 27.74 | 30.22 |
| CDY17466 | Canola | nucleus | 28.42 | 29.86 |
| CDY45806 | Canola | nucleus | 29.79 | 29.69 |
| CDX84885 | Canola | nucleus | 29.79 | 29.29 |
| CDX87255 | Canola | nucleus, plastid | 27.74 | 28.93 |
| Solyc09g097870.2.1 | Tomato | nucleus | 42.47 | 28.77 |
| CDX79883 | Canola | nucleus | 29.45 | 28.48 |
| PGSC0003DMT400042791 | Potato | nucleus | 42.81 | 28.47 |
| CDY47666 | Canola | endoplasmic reticulum, extracellular | 13.36 | 28.26 |
| CDX75440 | Canola | nucleus | 31.51 | 27.96 |
| CDX88966 | Canola | nucleus | 31.51 | 27.71 |
| CDY31048 | Canola | nucleus | 29.79 | 27.71 |
| CDX67710 | Canola | nucleus | 30.48 | 27.64 |
| PGSC0003DMT400011651 | Potato | nucleus | 39.04 | 27.6 |
| CDX69067 | Canola | nucleus | 31.85 | 27.35 |
| Solyc12g098620.1.1 | Tomato | nucleus | 37.67 | 27.23 |
| CDY53497 | Canola | nucleus | 28.77 | 27.18 |
| CDY20659 | Canola | nucleus | 30.48 | 26.73 |
| CDX71994 | Canola | nucleus | 32.53 | 26.32 |
| CDY61581 | Canola | plastid | 16.44 | 26.23 |
| CDY06074 | Canola | nucleus | 31.85 | 26.12 |
| CDY53834 | Canola | nucleus | 30.82 | 25.94 |
| CDY22605 | Canola | nucleus | 31.16 | 25.78 |
| CDY51061 | Canola | nucleus | 37.33 | 25.17 |
| CDX86297 | Canola | nucleus | 40.75 | 24.29 |
| CDY63738 | Canola | nucleus | 28.42 | 24.27 |
| CDY61420 | Canola | extracellular | 11.3 | 24.26 |
| CDX85347 | Canola | nucleus | 40.75 | 24.24 |
| CDY47665 | Canola | cytosol | 20.55 | 23.35 |
| CDY28061 | Canola | nucleus | 35.96 | 23.18 |
| CDY35923 | Canola | nucleus, plastid | 35.27 | 22.99 |
| CDY45835 | Canola | nucleus | 35.62 | 22.96 |
| CDY33568 | Canola | nucleus | 35.96 | 21.78 |
| CDX81575 | Canola | nucleus | 35.27 | 21.68 |
| CDX95974 | Canola | nucleus | 35.27 | 21.5 |
| CDY57925 | Canola | nucleus | 28.08 | 20.6 |
| VIT_05s0029g00390.t01 | Wine grape | nucleus | 37.67 | 20.22 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | GO:A0A078F962 | UniProt:A0A078F962 | EnsemblPlants:CDY08308 |
| ProteinID:CDY08308 | ProteinID:CDY08308.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00125657001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF184 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EDF181 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaA05g13110DBnaA05g13110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F962]
Coordinates
chrLK031984:-:931311..933056
Molecular Weight (calculated)
32658.3 Da
IEP (calculated)
5.133
GRAVY (calculated)
-0.689
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MDKETEENLN CLLPFGDGND AMMISDFVGR FCDTQEFPVG FPYLGHFGHS QVQESNKSSL LDPGSVSGTG KTRPNSRKRK ESPASSSLTA SNSKMQEENN
101: AAVAGKQNET EKSENKDEEK PSEPYKDYIH VRARRGQATD SHSIAERARR EKISARMKLL QDLVPGCNRI TGKAVMLDEI INYVESLQRQ VQFLSMKLAT
201: INPRTEFNAA NAMLSAEMLQ LGESLSCSES RFPSEYLAVG KNILSEGFVQ AEAPAFWEND LQSIVHMGFR DYQQQSINCS EPTVQMKIEP ER
101: AAVAGKQNET EKSENKDEEK PSEPYKDYIH VRARRGQATD SHSIAERARR EKISARMKLL QDLVPGCNRI TGKAVMLDEI INYVESLQRQ VQFLSMKLAT
201: INPRTEFNAA NAMLSAEMLQ LGESLSCSES RFPSEYLAVG KNILSEGFVQ AEAPAFWEND LQSIVHMGFR DYQQQSINCS EPTVQMKIEP ER
001: MNMDKETEQT LNYLPLGQSD PFGNGNEGTI GDFLGRYCNN PQEISPLTLQ SFSLNSQISE NFPISGGIRF PPYPGQFGSD REFGSQPTTQ ESNKSSLLDP
101: DSVSDRVHTT KSNSRKRKSI PSGNGKESPA SSSLTASNSK VSGENGGSKG GKRSKQDVAG SSKNGVEKCD SKGDNKDDAK PPEAPKDYIH VRARRGQATD
201: SHSLAERARR EKISERMTLL QDLVPGCNRI TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRMEFNAN ASLSTEMIQP GESLTQSLYA MACSEQRLPS
301: AYYSLGKNMP RFSDTQFPSN DGFVHTETPG FWENNDLQSI VQMGFGDILQ QQSNNNNNNC SEPTLQMKLE P
101: DSVSDRVHTT KSNSRKRKSI PSGNGKESPA SSSLTASNSK VSGENGGSKG GKRSKQDVAG SSKNGVEKCD SKGDNKDDAK PPEAPKDYIH VRARRGQATD
201: SHSLAERARR EKISERMTLL QDLVPGCNRI TGKAVMLDEI INYVQSLQRQ VEFLSMKLAT VNPRMEFNAN ASLSTEMIQP GESLTQSLYA MACSEQRLPS
301: AYYSLGKNMP RFSDTQFPSN DGFVHTETPG FWENNDLQSI VQMGFGDILQ QQSNNNNNNC SEPTLQMKLE P
Arabidopsis Description
BHLH77Transcription factor bHLH77 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK48]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.