Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G48560.1 | CDY30379 | AT2G43060.1 | 21798944 |
| AT5G48560.1 | CDY53659 | AT2G43060.1 | 21798944 |
| AT5G48560.1 | CDY55504 | AT2G43060.1 | 21798944 |
| AT5G48560.1 | CDY56346 | AT2G43060.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY05670 | Canola | nucleus | 72.32 | 75.97 |
| CDX85347 | Canola | nucleus | 91.88 | 50.71 |
| Bra037478.1-P | Field mustard | nucleus | 90.77 | 50.2 |
| CDX86297 | Canola | nucleus | 90.77 | 50.2 |
| CDY51061 | Canola | nucleus | 74.54 | 46.65 |
| CDY72360 | Canola | cytosol | 24.35 | 44.0 |
| AT5G48560.1 | Thale cress | nucleus | 78.97 | 42.97 |
| CDY25986 | Canola | plastid | 29.89 | 37.16 |
| CDY08308 | Canola | nucleus | 36.9 | 34.25 |
| CDY33821 | Canola | mitochondrion, plastid | 24.72 | 34.18 |
| CDY64034 | Canola | nucleus | 37.27 | 32.9 |
| CDY28061 | Canola | nucleus | 54.98 | 32.89 |
| CDY18099 | Canola | nucleus | 26.94 | 32.74 |
| CDX77488 | Canola | nucleus | 39.11 | 32.22 |
| CDX85122 | Canola | nucleus | 39.11 | 32.02 |
| CDY35923 | Canola | nucleus, plastid | 52.77 | 31.92 |
| CDY56230 | Canola | nucleus | 38.75 | 31.53 |
| CDY37979 | Canola | nucleus | 30.63 | 31.2 |
| CDX93427 | Canola | nucleus | 30.63 | 30.97 |
| CDY45806 | Canola | nucleus | 32.47 | 30.03 |
| CDX87255 | Canola | nucleus, plastid | 31.0 | 30.0 |
| CDX76288 | Canola | nucleus | 27.68 | 30.0 |
| CDX84885 | Canola | nucleus | 32.47 | 29.63 |
| CDY61420 | Canola | extracellular | 14.39 | 28.68 |
| CDY17466 | Canola | nucleus | 28.41 | 27.7 |
| CDY47666 | Canola | endoplasmic reticulum, extracellular | 14.02 | 27.54 |
| CDY31048 | Canola | nucleus | 31.37 | 27.07 |
| CDY20659 | Canola | nucleus | 32.1 | 26.13 |
| CDX75440 | Canola | nucleus | 31.0 | 25.53 |
| CDX98249 | Canola | nucleus | 25.83 | 25.0 |
| CDX69067 | Canola | nucleus | 31.0 | 24.71 |
| CDX79883 | Canola | nucleus | 27.31 | 24.5 |
| CDY53834 | Canola | nucleus | 31.0 | 24.21 |
| CDY22605 | Canola | nucleus | 31.37 | 24.08 |
| CDY61581 | Canola | plastid | 16.24 | 24.04 |
| CDY63738 | Canola | nucleus | 29.89 | 23.68 |
| CDY53497 | Canola | nucleus | 26.94 | 23.62 |
| KRH07417 | Soybean | nucleus, plastid | 50.55 | 23.26 |
| CDX88966 | Canola | nucleus | 28.41 | 23.19 |
| KRG99606 | Soybean | nucleus | 49.45 | 23.1 |
| CDX67710 | Canola | nucleus | 27.31 | 22.98 |
| KRH66158 | Soybean | nucleus, plastid | 49.08 | 22.39 |
| KRH46615 | Soybean | nucleus | 47.97 | 22.18 |
| CDX71994 | Canola | nucleus | 28.78 | 21.61 |
| CDY06074 | Canola | nucleus | 28.04 | 21.35 |
| CDY57925 | Canola | nucleus | 30.26 | 20.6 |
| CDY45835 | Canola | nucleus | 33.58 | 20.09 |
| CDX81575 | Canola | nucleus | 33.58 | 19.16 |
| CDY33568 | Canola | nucleus | 33.21 | 18.67 |
| CDX95974 | Canola | nucleus | 32.84 | 18.58 |
| CDY47665 | Canola | cytosol | 16.24 | 17.12 |
Protein Annotations
| MapMan:15.5.32 | MapMan:26.1.2.1.2 | Gene3D:4.10.280.10 | GO:A0A078DAJ5 | EnsemblPlants:CDX86296 | ProteinID:CDX86296 |
| ProteinID:CDX86296.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0046983 |
| EnsemblPlantsGene:GSBRNA2T00144409001 | InterPro:HLH_DNA-bd_sf | InterPro:IPR011598 | InterPro:IPR036638 | PFAM:PF00010 | PFscan:PS50888 |
| PANTHER:PTHR12565 | PANTHER:PTHR12565:SF184 | SMART:SM00353 | SUPFAM:SSF47459 | UniParc:UPI0004EDB903 | InterPro:bHLH_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaA06g30130D
Coordinates
chrLK031845:-:807572..811794
Molecular Weight (calculated)
30746.2 Da
IEP (calculated)
6.450
GRAVY (calculated)
-0.796
Length
271 amino acids
Sequence
(BLAST)
(BLAST)
001: MSKSSSLHHT LYEKELSDKY HEAKVIFCMI NQFTAERKEV SEEKGGKRRR EDEGDEEEGD KGTNDTKPPE PPKDYIHVRA RRGQATDSHS LAERVRREKI
101: GERMKLLQDL VPGCNKVTGK ALMLDEIINY VQSLQRQVEF LSMKLSSVND TRLEFNVDAL VSKDAMISSS GSRVHESGLQ LESLSHHNYN NNSQLHTNVS
201: SNNMMLHSPM KSLEPSALAR GFTHLPTLTQ FTDTISQYQM FSEEDLQSIV GMGVAHNPNH ESQSQNMKIE L
101: GERMKLLQDL VPGCNKVTGK ALMLDEIINY VQSLQRQVEF LSMKLSSVND TRLEFNVDAL VSKDAMISSS GSRVHESGLQ LESLSHHNYN NNSQLHTNVS
201: SNNMMLHSPM KSLEPSALAR GFTHLPTLTQ FTDTISQYQM FSEEDLQSIV GMGVAHNPNH ESQSQNMKIE L
001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL
Arabidopsis Description
BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.