Factsheet for AT5G48560.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020691.1-P	Field mustard	nucleus	74.7	83.6
CDY51061	Canola	nucleus	72.49	83.37
Bra037478.1-P	Field mustard	nucleus	80.12	81.43
CDX86297	Canola	nucleus	79.92	81.22
CDY05670	Canola	nucleus	41.97	81.01
CDX85347	Canola	nucleus	79.72	80.86
CDX86296	Canola	nucleus	42.97	78.97
AT3G07340.1	Thale cress	nucleus	58.03	63.38
KRG99606	Soybean	nucleus	50.2	43.1
KRH46615	Soybean	nucleus	48.8	41.47
KRH66158	Soybean	nucleus, plastid	48.19	40.4
KRH07417	Soybean	nucleus, plastid	47.59	40.24
AT5G50915.2	Thale cress	nucleus	20.88	36.36
AT3G23690.1	Thale cress	nucleus	26.31	35.31
AT5G62610.2	Thale cress	nucleus	19.68	34.88
AT1G26260.1	Thale cress	nucleus	24.9	31.79
AT4G34530.1	Thale cress	nucleus	20.88	31.04
AT2G42300.1	Thale cress	nucleus	20.08	30.58
AT1G10120.1	Thale cress	nucleus	21.69	29.51
AT1G59640.2	Thale cress	nucleus	19.08	27.7
AT1G68920.1	Thale cress	nucleus	25.7	26.34
AT3G57800.1	Thale cress	nucleus	21.29	24.88

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EntrezGene:834912	ProteinID:AED95688.1	EMBL:AF488610
ArrayExpress:AT5G48560	EnsemblPlantsGene:AT5G48560	RefSeq:AT5G48560	TAIR:AT5G48560	RefSeq:AT5G48560-TAIR-G	EnsemblPlants:AT5G48560.1
TAIR:AT5G48560.1	ProteinID:BAB10689.1	EMBL:BT002945	EMBL:BT005637	ncoils:Coil	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009637	GO:GO:0009987
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	RefSeq:NP_199667.1	PFAM:PF00010
PO:PO:0000013	PO:PO:0000230	PO:PO:0000293	PO:PO:0007095	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0009005	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025281	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	UniProt:Q9FJL4
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000000BE52	InterPro:bHLH_dom	SEG:seg	:

Description

BHLH78Transcription factor bHLH78 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJL4]

Coordinates

chr5:+:19683809..19687187

Molecular Weight (calculated)

54881.0 Da

IEP (calculated)

6.305

GRAVY (calculated)

-0.826

Length

498 amino acids

Sequence
(BLAST)

001: MDNELFMNTE FPPPPEMATH FEHQQSSSSA MMLNWALMDP NPHQDSSFLW EKSTEQQQQQ SIFDSALSSL VSSPTPSNSN FSGGGGDGFL IRELIGKLGN
101: IGNNNNNSGE IYGTPMSRSA SCYATPMSSP PPPTNSNSQM MMNRTTPLTE FSADPGFAER AARFSCFGSR SFNGRTNTNL PINNGNNMVN NSGKLTRVSS
201: TPALKALVSP EVTPGGEFSR KRKSVPKGKS KENPISTASP SPSFSKTAEK NGGKGGSKSS EEKGGKRRRE EEDDEEEEGE GEGNKSNNTK PPEPPKDYIH
301: VRARRGQATD SHSLAERVRR EKIGERMKLL QDLVPGCNKV TGKALMLDEI INYVQSLQRQ VEFLSMKLSS VNDTRLDFNV DALVSKDVMI PSSNNRLHEE
401: GLQSKSSSHH HQQQLNIYNN NSQLLPNISS NNMMLQSPMN SLETSTLARS FTHLPTLTQF TDSISQYQMF SEEDLQSIVG MGVAENPNNE SQHMKIEL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.