Factsheet for AT3G07340.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra029640.1-P	Field mustard	nucleus, plastid	71.93	73.87
CDY28061	Canola	nucleus	72.15	72.63
CDY35923	Canola	nucleus, plastid	70.39	71.65
AT5G48560.1	Thale cress	nucleus	63.38	58.03
KRG99606	Soybean	nucleus	53.51	42.07
KRH46615	Soybean	nucleus	52.19	40.61
KRH07417	Soybean	nucleus, plastid	51.32	39.73
KRH66158	Soybean	nucleus, plastid	51.1	39.23
AT5G50915.2	Thale cress	nucleus	23.03	36.71
AT5G62610.2	Thale cress	nucleus	21.49	34.88
AT1G26260.1	Thale cress	nucleus	27.41	32.05
AT3G23690.1	Thale cress	nucleus	25.44	31.27
AT1G10120.1	Thale cress	nucleus	24.34	30.33
AT2G42300.1	Thale cress	nucleus	21.27	29.66
AT4G34530.1	Thale cress	nucleus	21.71	29.55
AT1G59640.2	Thale cress	nucleus	21.05	27.99
AT1G68920.1	Thale cress	nucleus	29.17	27.37
AT3G57800.1	Thale cress	nucleus	22.81	24.41

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EntrezGene:819922	ProteinID:AAF02164.1	ProteinID:AEE74530.1
EMBL:AF488595	EMBL:AK175369	EMBL:AK175496	EMBL:AK176563	EMBL:AK176663	ArrayExpress:AT3G07340
EnsemblPlantsGene:AT3G07340	RefSeq:AT3G07340	TAIR:AT3G07340	RefSeq:AT3G07340-TAIR-G	EnsemblPlants:AT3G07340.1	TAIR:AT3G07340.1
EMBL:BT026497	ncoils:Coil	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	RefSeq:NP_187390.1
PFAM:PF00010	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293
PO:PO:0001054	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030
PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030
PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025281	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	UniProt:Q9SRT2	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI00000A0DF8
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

BHLH62Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2]

Coordinates

chr3:-:2340845..2343697

Molecular Weight (calculated)

50250.1 Da

IEP (calculated)

6.708

GRAVY (calculated)

-0.594

Length

456 amino acids

Sequence
(BLAST)

001: MENELFMNAG VSHPPVMTSP SSSSAMLKWV SMETQPVDPS LSRNLFWEKS TEQSIFDSAL SSLVSSPTPS NSNFSVGGVG GENVIMRELI GKLGNIGDIY
101: GITASNGNSC YATPMSSPPP GSMMETKTTT PMAELSGDPG FAERAARFSC FGSRSFNSRT NSPFPINNEP PITTNEKMPR VSSSPVFKPL ASHVPAGESS
201: GELSRKRKTK SKQNSPSAVS SSKEIEEKED SDPKRCKKSE ENGDKTKSID PYKDYIHVRA RRGQATDSHS LAERVRREKI SERMKLLQDL VPGCNKVTGK
301: ALMLDEIINY VQSLQRQVEF LSMKLSSVNT RLDFNMDALL SKDIFPSSNN LMHHQQVLQL DSSAETLLGD HHNKNLQLNP DISSNNVINP LETSETRSFI
401: SHLPTLAHFT DSISQYSTFS EDDLHSIIHM GFAQNRLQEL NQGSSNQVPS HMKAEL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.