Factsheet for AT1G26260.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G50915.2	Thale cress	nucleus	25.38	34.62
AT1G68920.1	Thale cress	nucleus	40.0	32.1
AT1G10120.1	Thale cress	nucleus	29.23	31.15
GSMUA_Achr3P12130_001	Banana	nucleus	30.26	30.97
GSMUA_Achr1P09570_001	Banana	nucleus	27.18	30.55
AT4G34530.1	Thale cress	nucleus	26.15	30.45
AT2G42300.1	Thale cress	nucleus	25.13	29.97
AT5G62610.2	Thale cress	nucleus	21.54	29.89
GSMUA_Achr2P09660_001	Banana	nucleus	23.33	28.71
GSMUA_Achr1P19120_001	Banana	nucleus	30.77	27.97
AT3G23690.1	Thale cress	nucleus	26.15	27.49
AT3G07340.1	Thale cress	nucleus	32.05	27.41
GSMUA_Achr9P09770_001	Banana	nucleus	21.79	26.65
GSMUA_Achr3P13490_001	Banana	nucleus	29.49	26.38
AT5G48560.1	Thale cress	nucleus	31.79	24.9
AT1G59640.2	Thale cress	nucleus	21.54	24.49
AT3G57800.1	Thale cress	nucleus	26.67	24.41

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EntrezGene:839167	UniProt:A0A178WLZ9	ProteinID:AAG50678.1
ProteinID:AEE30667.1	ProteinID:AEE30668.1	ProteinID:AEE30669.1	EMBL:AF488608	EMBL:AJ630483	EMBL:AK117355
ProteinID:ANM60813.1	ProteinID:ANM60815.1	ArrayExpress:AT1G26260	EnsemblPlantsGene:AT1G26260	RefSeq:AT1G26260	TAIR:AT1G26260
RefSeq:AT1G26260-TAIR-G	EnsemblPlants:AT1G26260.1	TAIR:AT1G26260.1	EMBL:AY568655	EMBL:BT005334	Symbol:CIB5
GO:GO:0000003	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009628	GO:GO:0009637	GO:GO:0009791	GO:GO:0009908	GO:GO:0009911	GO:GO:0009987
GO:GO:0040007	GO:GO:0040008	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
RefSeq:NP_001031093.1	RefSeq:NP_001323071.1	RefSeq:NP_001323073.1	RefSeq:NP_173950.1	RefSeq:NP_973913.1	ProteinID:OAP19204.1
PFAM:PF00010	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293	PO:PO:0001054
PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095
PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616
PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009052	PO:PO:0020038	PO:PO:0020100	PO:PO:0025022	PO:PO:0025281	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	UniProt:Q9C670	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000000C5F7
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

BHLH76Transcription factor bHLH76 [Source:UniProtKB/Swiss-Prot;Acc:Q9C670]

Coordinates

chr1:+:9086804..9089375

Molecular Weight (calculated)

43241.6 Da

IEP (calculated)

5.297

GRAVY (calculated)

-0.758

Length

390 amino acids

Sequence
(BLAST)

001: MSDKDEFAAK KKDLVNTPVD LYPPENPMLG PSPMMDSFRE TLWHDGGFNV HTDADTSFRG NNNIDIPLEM GWNMAQFPAD SGFIERAAKF SFFGCGEMMM
101: NQQQSSLGVP DSTGLFLQDT QIPSGSKLDN GPLTDASKLV KERSINNVSE DSQSSGGNGH DDAKCGQTSS KGFSSKKRKR IGKDCEEEED KKQKDEQSPT
201: SNANKTNSEK QPSDSLKDGY IHMRARRGQA TNSHSLAERV RREKISERMK FLQDLVPGCD KVTGKAVMLD EIINYVQSLQ CQIEFLSMKL SAVNPVLDFN
301: LESLLAKDAL QSSAPTFPHN MSMLYPPVSY LSQTGFMQPN ISSMSLLSGG LKRQETHGYE SDHHNLVHMN HETGTAPDHE DTTADMKVEP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.