Factsheet for AT5G62610.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX87255	Canola	nucleus, plastid	88.97	89.29
KRH03393	Soybean	nucleus	46.62	57.21
KRH56987	Soybean	plastid	43.77	54.91
PGSC0003DMT400004855	Potato	nucleus	42.35	53.85
Solyc04g005130.2.1	Tomato	nucleus	43.42	53.74
Os07t0193800-01	Rice	endoplasmic reticulum	36.65	49.52
HORVU5Hr1G107520.2	Barley	cytosol, nucleus	35.59	48.31
Os03t0802900-01	Rice	nucleus	45.2	47.92
Zm00001d007768_P001	Maize	nucleus	42.7	47.81
GSMUA_Achr9P11020_001	Banana	nucleus	43.77	47.67
Zm00001d034503_P002	Maize	nucleus	41.64	45.88
TraesCS5D01G459800.1	Wheat	nucleus, plastid	40.57	45.24
EER90712	Sorghum	nucleus	40.57	45.06
TraesCS5B01G457600.1	Wheat	nucleus, plastid	40.57	44.88
GSMUA_Achr7P01750_001	Banana	nucleus	49.11	41.07
GSMUA_Achr4P17570_001	Banana	golgi, vacuole	46.62	35.69
AT1G59640.2	Thale cress	nucleus	39.86	32.65
AT5G50915.2	Thale cress	nucleus	28.11	27.62
AT3G23690.1	Thale cress	nucleus	34.88	26.42
AT4G34530.1	Thale cress	nucleus	29.54	24.78
AT2G42300.1	Thale cress	nucleus	27.05	23.24
AT1G10120.1	Thale cress	nucleus	29.54	22.68
AT1G26260.1	Thale cress	nucleus	29.89	21.54
AT3G07340.1	Thale cress	nucleus	34.88	21.49
AT5G48560.1	Thale cress	nucleus	34.88	19.68
AT3G57800.1	Thale cress	nucleus	28.11	18.54
AT1G68920.1	Thale cress	nucleus	30.96	17.9

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	EntrezGene:836382	UniProt:A0A178UAT6	ProteinID:AED97630.1
EMBL:AF488611	ProteinID:ANM68566.1	ArrayExpress:AT5G62610	EnsemblPlantsGene:AT5G62610	RefSeq:AT5G62610	TAIR:AT5G62610
RefSeq:AT5G62610-TAIR-G	EnsemblPlants:AT5G62610.2	EMBL:AY072104	EMBL:AY084578	EMBL:AY123023	ProteinID:BAA97208.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0043565
GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638	RefSeq:NP_001330306.1	RefSeq:NP_201067.1
ProteinID:OAO90212.1	PFAM:PF00010	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF184	UniProt:Q9LV17
SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000005EB92	InterPro:bHLH_dom	SEG:seg	:

Description

BHLH79Transcription factor bHLH79 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV17]

Coordinates

chr5:-:25132848..25136065

Molecular Weight (calculated)

30571.5 Da

IEP (calculated)

6.065

GRAVY (calculated)

-0.742

Length

281 amino acids

Sequence
(BLAST)

001: MDPPLVNDSS FSAANPSSYT LSEIWPFPVN DAVRSGLRLA VNSGRVFTRS EHSGNKDVSA AEESTVTDLT AGWGSRKTRD LNSEDDSSKM VSSSSSGNEL
101: KESGDKKRKL CGSESGNGDG SMRPEGETSS GGGGSKATEQ KNKPEPPKDY IHVRARRGQA TDRHSLAERA RREKISEKMT ALQDIIPGCN KIIGKALVLD
201: EIINYIQSLQ RQVEFLSMKL EVVNSGASTG PTIGVFPSGD LGTLPIDVHR TIYEQQEANE TRVSQPEWLH MQVDGNFNRT T

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.