Factsheet for PGSC0003DMT400004855

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g005130.2.1	Tomato	nucleus	95.93	93.39
PGSC0003DMT400058204	Potato	nucleus	76.02	62.22
HORVU5Hr1G107520.2	Barley	cytosol, nucleus	50.68	54.11
Os07t0193800-01	Rice	endoplasmic reticulum	50.68	53.85
KRH56987	Soybean	plastid	53.85	53.12
KRH03393	Soybean	nucleus	54.75	52.84
Os03t0802900-01	Rice	nucleus	56.56	47.17
TraesCS5D01G459800.1	Wheat	nucleus, plastid	52.94	46.43
Zm00001d034503_P002	Maize	nucleus	53.39	46.27
Zm00001d007768_P001	Maize	nucleus	52.49	46.22
GSMUA_Achr9P11020_001	Banana	nucleus	53.85	46.12
EER90712	Sorghum	nucleus	52.49	45.85
TraesCS5B01G457600.1	Wheat	nucleus, plastid	52.04	45.28
PGSC0003DMT400062844	Potato	nucleus	59.28	45.02
CDX87255	Canola	nucleus, plastid	53.85	42.5
AT5G62610.2	Thale cress	nucleus	53.85	42.35
GSMUA_Achr7P01750_001	Banana	nucleus	55.66	36.61
GSMUA_Achr4P17570_001	Banana	golgi, vacuole	53.85	32.43
PGSC0003DMT400058169	Potato	nucleus	35.75	29.48
PGSC0003DMT400040021	Potato	nucleus	38.01	27.72
PGSC0003DMT400069568	Potato	nucleus	33.48	26.06
PGSC0003DMT400051137	Potato	nucleus	39.37	25.74
PGSC0003DMT400042791	Potato	nucleus	46.61	23.46
PGSC0003DMT400021130	Potato	nucleus	35.75	21.94
PGSC0003DMT400011651	Potato	nucleus	38.46	20.58
PGSC0003DMT400001888	Potato	nucleus	40.72	20.36
PGSC0003DMT400012591	Potato	nucleus	34.84	20.16
PGSC0003DMT400053639	Potato	nucleus	43.89	19.72
PGSC0003DMT400051980	Potato	mitochondrion, nucleus	38.91	18.42
PGSC0003DMT400004830	Potato	nucleus	34.84	16.63
PGSC0003DMT400050585	Potato	nucleus	38.01	16.15
PGSC0003DMT400022704	Potato	nucleus	38.46	15.89

Protein Annotations

MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	GO:GO:0005515	GO:GO:0043565	GO:GO:0046983	InterPro:HLH_DNA-bd_sf
InterPro:IPR011598	InterPro:IPR036638	UniProt:M0ZP34	PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG400001930	PGSC:PGSC0003DMG400001930
EnsemblPlants:PGSC0003DMT400004855	PFscan:PS50888	PANTHER:PTHR12565	PANTHER:PTHR12565:SF305	SMART:SM00353	SUPFAM:SSF47459
UniParc:UPI000296F44E	InterPro:bHLH_dom	SEG:seg	:	:	:

Description

MYC1 [Source:PGSC_GENE;Acc:PGSC0003DMG400001930]

Coordinates

chr00:-:12426946..12434538

Molecular Weight (calculated)

24388.5 Da

IEP (calculated)

7.763

GRAVY (calculated)

-0.780

Length

221 amino acids

Sequence
(BLAST)

001: MSAFQTAPNL AEIWPYQHLL DHTTNHAARK RRDDDESAIG VSTSANALTE SDSKRLKATR SNENGEYSGG GNSGKSSDQP AKPPAEPPKD YIHVRARRGQ
101: ATDNHSLAER ARREKISDRM KILQDLVPGC NKVIGKALVL DEIINYVQSL QRQVEFLSMK LEAVNTRVTP TIDGIPTKDF GQQTFETNTM AFGSQGTREY
201: AGGTSPDWLH MQIGGGFERT T

Best Arabidopsis Sequence Match ( AT1G59640.1 )
(BLAST)

001: MDPSGMMNEG GPFNLAEIWQ FPLNGVSTAG DSSRRSFVGP NQFGDADLTT AANGDPARMS HALSQAVIEG ISGAWKRRED ESKSAKIVST IGASEGENKR
101: QKIDEVCDGK AEAESLGTET EQKKQQMEPT KDYIHVRARR GQATDSHSLA ERARREKISE RMKILQDLVP GCNKVIGKAL VLDEIINYIQ SLQRQVEFLS
201: MKLEAVNSRM NPGIEVFPPK EFGQQAFENP EIQFGSQSTR EYSRGASPEW LHMQIGSGGF ERTS

Arabidopsis Description

BPETranscription factor BPE [Source:UniProtKB/Swiss-Prot;Acc:Q0JXE7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.