Factsheet for PGSC0003DMT400021130

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g079070.1.1	Tomato	nucleus	96.39	96.12
VIT_08s0007g07870.t01	Wine grape	nucleus	61.67	60.99
KRG95332	Soybean	nucleus	57.5	56.56
KRH71879	Soybean	nucleus	53.33	54.24
KRH33022	Soybean	nucleus	53.33	53.78
CDX79883	Canola	nucleus	43.33	51.66
Bra004679.1-P	Field mustard	nucleus	43.33	51.66
AT2G42300.1	Thale cress	nucleus	46.39	51.07
CDY53497	Canola	nucleus	43.61	50.81
CDX98249	Canola	nucleus	39.44	50.71
Os06t0613500-01	Rice	cytosol, nucleus	25.0	50.56
KRH67006	Soybean	nucleus	55.56	50.0
CDX88966	Canola	nucleus	45.83	49.7
CDY06074	Canola	nucleus	48.61	49.16
Bra007358.1-P	Field mustard	nucleus	48.61	48.88
CDY47666	Canola	endoplasmic reticulum, extracellular	18.61	48.55
CDX71994	Canola	nucleus	48.33	48.2
Bra014603.1-P	Field mustard	nucleus	45.83	47.69
Bra003300.1-P	Field mustard	nucleus	42.22	47.2
CDX67710	Canola	nucleus	42.22	47.2
TraesCS7B01G303300.1	Wheat	nucleus	40.28	46.18
TraesCS7D01G397300.1	Wheat	nucleus, plastid	39.72	45.25
GSMUA_Achr9P22300_001	Banana	nucleus	35.83	44.48
GSMUA_Achr1P19610_001	Banana	nucleus	44.72	44.11
GSMUA_Achr4P19330_001	Banana	nucleus	46.67	43.41
TraesCS7A01G403900.1	Wheat	cytosol	18.33	42.86
HORVU7Hr1G094690.1	Barley	plastid	29.17	42.51
GSMUA_Achr7P06330_001	Banana	nucleus	43.06	42.35
CDY47665	Canola	cytosol	29.17	40.86
AT3G57800.1	Thale cress	nucleus	47.5	40.14
Zm00001d046759_P001	Maize	plastid	39.44	39.89
Zm00001d036807_P001	Maize	nucleus	38.61	37.57
OQU76702	Sorghum	nucleus	41.39	36.34
PGSC0003DMT400004855	Potato	nucleus	21.94	35.75
PGSC0003DMT400058204	Potato	nucleus	22.78	30.37
PGSC0003DMT400040021	Potato	nucleus	25.56	30.36
PGSC0003DMT400058169	Potato	nucleus	22.5	30.22
PGSC0003DMT400069568	Potato	nucleus	21.11	26.76
PGSC0003DMT400062844	Potato	nucleus	21.39	26.46
PGSC0003DMT400042791	Potato	nucleus	31.11	25.51
PGSC0003DMT400051137	Potato	nucleus	23.33	24.85
PGSC0003DMT400011651	Potato	nucleus	28.06	24.46
PGSC0003DMT400051980	Potato	mitochondrion, nucleus	30.56	23.55
PGSC0003DMT400012591	Potato	nucleus	24.44	23.04
PGSC0003DMT400001888	Potato	nucleus	28.06	22.85
PGSC0003DMT400053639	Potato	nucleus	29.72	21.75
PGSC0003DMT400050585	Potato	nucleus	30.83	21.35
PGSC0003DMT400004830	Potato	nucleus	25.56	19.87
PGSC0003DMT400022704	Potato	nucleus	27.22	18.32

Protein Annotations

EntrezGene:102582980	MapMan:15.5.32	MapMan:26.1.2.1.2	Gene3D:4.10.280.10	ncoils:Coil	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0046983	InterPro:HLH_DNA-bd_sf	InterPro:IPR011598	InterPro:IPR036638
UniProt:M1AEN9	PFAM:PF00010	EnsemblPlantsGene:PGSC0003DMG400008183	PGSC:PGSC0003DMG400008183	EnsemblPlants:PGSC0003DMT400021130	PFscan:PS50888
PANTHER:PTHR12565	PANTHER:PTHR12565:SF112	SMART:SM00353	SUPFAM:SSF47459	UniParc:UPI000296CB6F	RefSeq:XP_006351217.1
InterPro:bHLH_dom	SEG:seg	:	:	:	:

Description

BHLH transcription factor PTF1 [Source:PGSC_GENE;Acc:PGSC0003DMG400008183]

Coordinates

chr10:-:58646078..58651610

Molecular Weight (calculated)

39677.4 Da

IEP (calculated)

6.297

GRAVY (calculated)

-0.629

Length

360 amino acids

Sequence
(BLAST)

001: MDNLIESIEA GEARSENCGA RMGEIGTGFH QFGEEILSVT SEGGSSFTAL LGLPPNQAVE LLVQSPEADK MTSDKLAISE PHYRYPPPPI FPSDIALIDR
101: ASKFSVFAAA GNSPESNSTL SNSGSKSLFV KQEPIDSEFN HNSSPATSNP LVNQKSTKRK EREKKVKETS KKGKKSANDT SEDGGEKLPY VHVRARRGQA
201: TDSHSLAERA RREKINARMK LLQELVPGCN KISGTAMVLD EIINHVQSLQ RQVEFLSMRL AAVNPRVDFN LDSLFAAERS GSHVESNLQD MVVPPIWAEG
301: QTSGNRNQYQ HLWHYEGFHQ PAWGRLEDNS SFVTPENSLL TYDSSANSAS LHPNQLKMEL

Best Arabidopsis Sequence Match ( AT3G57800.2 )
(BLAST)

001: MDLTGGFGAR SGGVGPCREP IGLESLHLGD EFRQLVTTLP PENPGGSFTA LLELPPTQAV ELLHFTDSSS SQQAAVTGIG GEIPPPLHSF GGTLAFPSNS
101: VLMERAARFS VIATEQQNGN ISGETPTSSV PSNSSANLDR VKTEPAETDS SQRLISDSAI ENQIPCPNQN NRNGKRKDFE KKGKSSTKKN KSSEENEKLP
201: YVHVRARRGQ ATDSHSLAER ARREKINARM KLLQELVPGC DKIQGTALVL DEIINHVQSL QRQVEMLSMR LAAVNPRIDF NLDTILASEN GSLMDGSFNA
301: APMQLAWPQQ AIETEQSFHH RQLQQPPTQQ WPFDGLNQPV WGREEDQAHG NDNSNLMAVS ENVMVASANL HPNQVKMEL

Arabidopsis Description

BHLH60Transcription factor bHLH60 [Source:UniProtKB/Swiss-Prot;Acc:Q3EAI1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.